Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02201 ATGGCTCGACAACTGTGTGAAGACAAATCCGCTGGCTTCTGCTATTCTGGTAACCCAACAACGATGCAAGGGAACCAGATCCAAGGTTTTGTGTCGGACCCTGAGATGTTCAACCTCACCACAGGGATGGAAATGATAGGGTTTCACAAGAATCTTCAGCAACAACAAAGTGACAGCAACAGTGTCATATGGAAAAGTTTCTTTGCCAAACCTGGTCAACATCCGGGTCCTTCTTCTTCCAAGACCATGAACGAGTCTTGTAGCAATTTCTACCAGCATGAATATAATAATAATAATAATAAACATCCAGATTTTACATCAGGGATTTCTGAAACAAGTAGTGAAAATCTAATGGTGGGGGGTCATGATACAGCTCTATGGCAAGAGAACAGATTGCTAGTTGATGATTCTTCTTTAAGGTGTGTGTTCCCTTGTGAAGGAAACGAAAGGCCTAGTCAAGGTCTTTCACTCTCTCTCAGTTCAAACAACCCTTCTAGTATTGGATTGCAATCTTTTGAGCTAAGACATCATCAGACCCAACCTGATTTTGTTTCATCAAGTTCCTCAGCAAATGCTCAACAGATGTTGCAAGATGGGTATTTGAGTGCTAATAAAGCTGCAAATCTTAATCCTGGATATTTTCTGCTCAAGAACTCCAAGTACTTGGTACCTGCACAGGACCTTCTAAACGAGTTTTGTAGTCTAGGCACTAAGCAAAGTGATGTGCCAAAGCAAAAGTCCCAAAAGATCAAGCAGTGGGAAGAAGATAACGGTAGCGGTTCCTCAAAGAAACATTCTCTCACCTCTCTAGAGTTCGCTGAATTACACAAGAGAAAGACAAAGCTACTTTCGATGCTGGAAGAGGTTGAGAGAAGATACAGGCATTACCGTAATCAAATGAAGGCTGTGGTTTCATCATTTGAAGCAGTAGCTGGCAATGGAACTGCCACAGTGTACTCAGCGTTGGCTTTGAAAGCCATGTCAAGACATTTCAGGTGTTTGAAGGATGGGATTTTGGGTCAGATTCAATCCACAAGGAAAGCCATGGGAGAGAAAGATCCAGTTGCACCAGGCACAACAAGGGGTGAAACTCCAAGGCTCAAAATCATTGACCGAACACTCAGACAACAAAGGGCCTTCCAACAAATGAGCATGATGGAATCCCATCCATGGAGACCACAGCGTGGCCTTCCTGAGCGATCTGTCTCAGTTCTTCGTGCTTGGCTTTTTGAGCACTTTCTCCATCCGTACCCAAGCGACGTTGACAAACATATTTTAGCCCGGCAAACTGGTCTCTCGAGAAGTCAGGTTTCAAATTGGTTTATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGAGCAAGAAAACAATATAGCTTCCTCTGAGGGAGGTACTGATCCAGATGATGATATCAACCCCAATGTTCCTCATTCATCGAGATTAGACGATCAGAAGCCAACACCAGATCGCCTACTCGTTCGAATTGACTCCGAGTGTGCCTCATCCATCATCAATAATAACCATAACCAAGACAACAAAAACGACCCTAAGAACAGCACAAAAACGACTCTCCAGAACCAGCACCATATGAATCCCCAAGAAGAATGCTTTGGGTCAGTGGAGCTTGATTTTTCATCTTACACTAGTAATGATCAGAATGGGAACCAGAGTTTCAATGGTGGGGTGTCTTTGACACTAGGGTTACAGCAGCATGGTGGAAGCGGGGTGAGCCTAGCATTCCCACCACCAACTCAGAGTTCACTGTTCTATCCAAGGGACCAAATTGAAGATTGTCAACCAGTTCAGTACTCTCTTTTGGACGGTGAAGGACAAAACCTGCCATACAGGAATTTGATGGGTGCACAGCTTCTCCATGACTTGGCAGGATAG 1920 0.4417 MARQLCEDKSAGFCYSGNPTTMQGNQIQGFVSDPEMFNLTTGMEMIGFHKNLQQQQSDSNSVIWKSFFAKPGQHPGPSSSKTMNESCSNFYQHEYNNNNNKHPDFTSGISETSSENLMVGGHDTALWQENRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSNNPSSIGLQSFELRHHQTQPDFVSSSSSANAQQMLQDGYLSANKAANLNPGYFLLKNSKYLVPAQDLLNEFCSLGTKQSDVPKQKSQKIKQWEEDNGSGSSKKHSLTSLEFAELHKRKTKLLSMLEEVERRYRHYRNQMKAVVSSFEAVAGNGTATVYSALALKAMSRHFRCLKDGILGQIQSTRKAMGEKDPVAPGTTRGETPRLKIIDRTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEVKEQENNIASSEGGTDPDDDINPNVPHSSRLDDQKPTPDRLLVRIDSECASSIINNNHNQDNKNDPKNSTKTTLQNQHHMNPQEECFGSVELDFSSYTSNDQNGNQSFNGGVSLTLGLQQHGGSGVSLAFPPPTQSSLFYPRDQIEDCQPVQYSLLDGEGQNLPYRNLMGAQLLHDLAG* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02201 639 MobiDBLite consensus disorder prediction 514 539 - -
Rops1g02201 639 CDD homeodomain 391 452 IPR001356 GO:0003677
Rops1g02201 639 Gene3D - 394 456 - -
Rops1g02201 639 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 160 479 - -
Rops1g02201 639 Pfam Homeobox KN domain 408 447 IPR008422 GO:0003677|GO:0006355
Rops1g02201 639 SMART prehox3 210 340 IPR006563 -
Rops1g02201 639 FunFam BEL1-like homeodomain protein 4 394 456 - -
Rops1g02201 639 ProSiteProfiles 'Homeobox' domain profile. 388 451 IPR001356 GO:0003677
Rops1g02201 639 SUPERFAMILY Homeodomain-like 392 457 IPR009057 -
Rops1g02201 639 MobiDBLite consensus disorder prediction 463 498 - -
Rops1g02201 639 SMART HOX_1 391 455 IPR001356 GO:0003677
Rops1g02201 639 Pfam Associated with HOX 216 338 IPR006563 -
Rops1g02201 639 Coils Coil 272 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02201 Rops-Chr1 43639437 43643440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02201 105 638 Homeobox Transcription Factor Family AT5G41410 48.735 8.05e-144 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops1g02201 POX 7.2e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02201 - - gmx:100803088 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02201 1 43639437 43643440 Rops1g02201 1 43639437 43643440 ECH
Rops1g02201 1 43639437 43643440 Rops2g00522 2 7599740 7603536 PCT