Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02199 ATGGGATTTCCAGTTGGGTACACGGAGCTTGTATTGCCAAAGCTGTTTCTTCATCTCCTTTCTCTATTGGGTTTCATAAGGAAACTCGTCACCATCCTCTTCTGCTATCTGGGTCTAGAACCCGACATTGCCTGGCCCGACAGGATGCCCGAATTCCAATCGGTCCCTGCCCTGCTCATCGGAGAAATCCTGCCGGTGGTGAAGTTCTCGGAGCTGGCGGTGGTGGACCCACCGGACAGCTGTGCCGTCTGCCTCTACGACTTCGATGTAGACGACGAGATCAGACGGCTCACGAACTGCCGTCACATATTCCACAGAGGCTGTGTGGACCGTTGGATTGGGTACCATCACAGAACATGCCCATTGTGTAGGACACCCTTTATACCCCATCGTATGCAAGATGCCTTTGATCACACTCTCTGGGAACCTTCTGGGGTTCCTGACTTTTATGATGACTATCCTCCTTCTATCATGCCTTTCTAG 483 0.5197 MGFPVGYTELVLPKLFLHLLSLLGFIRKLVTILFCYLGLEPDIAWPDRMPEFQSVPALLIGEILPVVKFSELAVVDPPDSCAVCLYDFDVDDEIRRLTNCRHIFHRGCVDRWIGYHHRTCPLCRTPFIPHRMQDAFDHTLWEPSGVPDFYDDYPPSIMPF* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02199 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 129 IPR013083 -
Rops1g02199 160 ProSiteProfiles Zinc finger RING-type profile. 81 124 IPR001841 -
Rops1g02199 160 SMART ring_2 81 123 IPR001841 -
Rops1g02199 160 SUPERFAMILY RING/U-box 80 131 - -
Rops1g02199 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 20 138 - -
Rops1g02199 160 Pfam Ring finger domain 79 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02199 Rops-Chr1 43608044 43608526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02199 1 146 C3H Transcription Factor Family AT1G63840 56.329 5.52e-55 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02199 K16281 - fve:101313016 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02199 1 43608044 43608526 Rops1g02199 1 43608044 43608526 ECH
Rops1g02199 1 43608044 43608526 Rops2g00524 2 7652326 7653012 PCT