Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02198 ATGTCTTCTGATCTTTATACTTTTGATATTTCTGTCCCCAGACATTCAAGCCAAGACATGGTCTCCTCTAATGGAAGTGGAGACCTTATGTTTCTCTCTGATCCTTACCCTTTTCATTTCCTCACTGACTCTCCTATTGATGTAGCACAAGAGAATTTGAACAATTCACTTGACCCCTTCTCCTCTTCTTTATTTTCCTTTTCTCCTCCAAGTACCCTGCACCAGGAAAACCATAGCCTCTATCAGGCTAACCCTGTGCACCCTCTGTCAAATGGCTCAAACATAAGAAATGGGTTAGGAAGTTTCTCTGCTTCAGATGGGTCTGAAGTGAAAAGCGAGGAATGCCAAATTGGTGTGGATTATAAGTACAATCACCACTTTCTTCCTCACAGTTGGAGTGGTGCTGAAAGTGCATCAAAATTAATGCAAAGGAGCTATAGCTGTAACTCTTTTGATGGAAATCCTGGTTTCCCCTTGGAAGCTCAACATGACACTCTCATGGAATCCCCAAATTTTCAATGGCATGCCTTGAGCTCCCCTGAAAACAGTTTCTTCACTAGGGAAATGAGGAGGGTGTGTAGTGCAGGAGATTTGCAGAATATGAAAGCAACACACGAGTCTCAAACGGAGAACCACTCATTGGTGGAAGCAAACTTCAAAGTAGGGCGTTACAGTGCTGAAGAAAGAAAAGAAAAAATCTCCAAATACAGAGCCAAGAGAAGCCAGAGGAAGTTCAACAAGATTATTAAGTATGCATGCCGAAAGACACTAGCCGACAACAGAACACGCATACGTGGCAGATTCGCACGTCACGACGAAATTAGTGAGATTCCGAAAGCTCCATGTTTTTCAACCACTGGAGATTACGAAGACGAGTTGTGGAATGAACTGATTGAAGGGTTCAATGACGATCTCCTCAGTTAG 924 0.4297 MSSDLYTFDISVPRHSSQDMVSSNGSGDLMFLSDPYPFHFLTDSPIDVAQENLNNSLDPFSSSLFSFSPPSTLHQENHSLYQANPVHPLSNGSNIRNGLGSFSASDGSEVKSEECQIGVDYKYNHHFLPHSWSGAESASKLMQRSYSCNSFDGNPGFPLEAQHDTLMESPNFQWHALSSPENSFFTREMRRVCSAGDLQNMKATHESQTENHSLVEANFKVGRYSAEERKEKISKYRAKRSQRKFNKIIKYACRKTLADNRTRIRGRFARHDEISEIPKAPCFSTTGDYEDELWNELIEGFNDDLLS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02198 307 ProSiteProfiles CCT domain profile. 229 271 IPR010402 GO:0005515
Rops1g02198 307 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 57 276 IPR045281 GO:0009909
Rops1g02198 307 Pfam CCT motif 229 271 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02198 Rops-Chr1 43579500 43580818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02198 225 276 C2C2-CO-like Transcription Factor Family AT5G24930 46.154 1.72e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops1g02198 CCT 1.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02198 - - pvu:PHAVU_002G158500g 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02198 1 43579500 43580818 Rops1g02198 1 43579500 43580818 ECH
Rops1g02198 1 43579500 43580818 Rops2g00527 2 7685680 7688005 PCT