Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02197 ATGGGCGGTTGCTGTTGCTGTTGTTCTTCCAAAGAGACTGAATTGAACGCTCCCCCTCCATACTATTATTACCCAAGAGTATCGGAGGAGCATGTCCCACTATCATCTCACCATGGTGCTGCTCCTGCTTTTTCTGGGGGGCTCTTAGTTGATACCAATCTAGACACTTCAAGTCCTGATACTTATAGACCACCTCCTGCTCCTATTCCTTTCAATGTTACATTAGGTGCCACTCAAACACCACCTGTGACTCAAGAAATTTGTGTTGACAAAACTATCACGTCCTCGCATACTACAAATTCTAATTCAATTCAAGAAACAGTTGCCGGGGACAATAATGGAGCCTCAGCTAAGTCCGAAGACTTGAAGGAATCTGAATGCAAAGTTCAAACTGCTTTGGAACTTGACTCGGCAAAGGATTCTGAAATTGAACTTCCAAAGTTGGTTGAACCTATCATTTTAGTGGAAGAGGAGGATTCGTGCCCAATTTGTTTAGAAGAGTATGATGCAGAGAATCCAAAACTCTCCACCAAATGTGATCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGTCCTGTGTGTGATCAGGATGTGGTTTTCAACCCTCCCTTTGATTAA 639 0.4272 MGGCCCCCSSKETELNAPPPYYYYPRVSEEHVPLSSHHGAAPAFSGGLLVDTNLDTSSPDTYRPPPAPIPFNVTLGATQTPPVTQEICVDKTITSSHTTNSNSIQETVAGDNNGASAKSEDLKESECKVQTALELDSAKDSEIELPKLVEPIILVEEEDSCPICLEEYDAENPKLSTKCDHHFHLACILEWMERSETCPVCDQDVVFNPPFD* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02197 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Rops1g02197 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 40 208 - -
Rops1g02197 212 SMART ring_2 161 201 IPR001841 -
Rops1g02197 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 207 IPR013083 -
Rops1g02197 212 MobiDBLite consensus disorder prediction 97 121 - -
Rops1g02197 212 SUPERFAMILY RING/U-box 153 208 - -
Rops1g02197 212 FunFam Putative E3 ubiquitin-protein ligase RHB1A 138 206 - -
Rops1g02197 212 Pfam Ring finger domain 159 201 IPR001841 -
Rops1g02197 212 MobiDBLite consensus disorder prediction 97 114 - -
Rops1g02197 212 CDD RING-H2_AIRP1-like 157 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02197 Rops-Chr1 43569915 43572417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02197 1 212 C3H Transcription Factor Family AT5G41350 54.419 1.06e-73 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02197 - - gmx:100816369 364.77