Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02194 ATGGAGAAGGAGGAAGATGTGAAGGTTGGAGCAAACAAATTCTCAGAAAGGCAAGCTTTGGGCACATCTGCTCAGAGTGACAAGGACTATAAGGAGGCACCCCCAGCACCCTTGTTTGAACCAGGGGAGCTGAAGTCATGGTCTTTTTACAGAGCTGGGATTGCAGAGTTTGTGGCCACATTCTTGTTCCTCTACATCACAGTCTTAACTGTGATGGGTGTGAACAGGTCACACAGCAAGTGTTCCTCTGTGGGCATTCAAGGAATTGCTTGGGCTTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACAGCTGGAATATCAGGTGGACACATAAATCCGGCTGTGACCTTTGGTCTGTTTTTGGCTAGGAAGCTGTCCCTCACAAGAGCCCTATTCTATATTATCATGCAGTGTCTTGGAGCCATCTGTGGTGCTGGTGTGGTGAAGGGCTTTGAGGGCAATGCTCGGTATGAGATGTACAAAGGTGGAGCAAATTATGTGAATCATGGATACACCAAGGGTGATGGCCTTGGAGCTGAGATTGTTGGCACCTTTGTTCTTGTCTACACTGTCTTCTCCGCCACTGATGCCAAGAGAAATGCTAGAGACTCTCATGTTCCGATTTTGGCGCCTCTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCCACCATTCCCATCACGGGAACCGGCATTAACCCAGCTAGGAGTCTCGGTGCTGCCATAATATACAACAGAGACCATGCATGGGATGACCATTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCTGCACTATACCACCAGATAGTGATTCGAGCAATTCCTTTCAAGACAAGGGGTTAA 861 0.4855 MEKEEDVKVGANKFSERQALGTSAQSDKDYKEAPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVNRSHSKCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAICGAGVVKGFEGNARYEMYKGGANYVNHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKTRG* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02194 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 281 IPR034294 -
Rops1g02194 286 ProSitePatterns MIP family signature. 111 119 IPR022357 -
Rops1g02194 286 CDD MIP 51 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02194 286 FunFam Probable aquaporin PIP1-2 36 286 - -
Rops1g02194 286 MobiDBLite consensus disorder prediction 1 32 - -
Rops1g02194 286 NCBIfam MIP family channel protein 55 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02194 286 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02194 286 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02194 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02194 286 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02194 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02194 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02194 286 Pfam Major intrinsic protein 43 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02194 286 SUPERFAMILY Aquaporin-like 43 278 IPR023271 -
Rops1g02194 286 Gene3D Glycerol uptake facilitator protein. 36 284 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02194 Rops-Chr1 43531108 43532730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02194 3 285 Major Intrinsic Protein MIP AT3G61430 87.633 1.06e-177 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02194 K09872 - gmx:100796833 561.222