Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02191 ATGGGGAAGGGTAAACCTAGGGCTGTGGAGAAAGGTGTGGTAGGGCCAAGTACTAGTGTTGCAGCATCGTGTGGGTCCACTACTATACCAGCAGGACCTGTGTATTATCCAACTGAGGAGGAATTTAAGGATCCTTTGGAGTTTATTTACAAGATTAGACCTGAGGCTGAGCCTTATGGAATTTGTAAGATTGTGCCTCCTAAGAGTTGGAAACCCCCTTTTGCTTTGGATCTGGATTCTTTCACTTTCCCTACCAAGACTCAGGCTATTCATAAGTTGCAGGCACGCCCTGCTGCCTCTGACCCTAAGACTTTTGAGTTGGAGTACTCTAGGTTTTTGCAGGATCATCGTGGTAAGAAGTCGAAGAAAAGGGTTGTGTTTGAAGGGGAGGAGTTGGACTTGTGCAAGCTGTTTAATGCTGTGAAACGGTTTGGAGGATACGATAAGGTTGTTGAAGGAAAGAAATGGGGGGATGTTGCTCGGTTTGTGAGGTCTTCCGGGAAGATTTCGGACTGTGCTAAGCATGTGTTGTGTCAGTTGTACCGAGAGCATTTGTATGATTACGAGAATTTCTATAATCGGATGAATCGAGGGATGAGTCGGAGTTGTAAGAAAGGAGTGCCAGAGGATTGTAAGAGTGATCACGGGGTACAAGCTTCAGCATCCAAGAGGCATCACCAGCGTGGTGATTCCTTGAAGGTCAAGGATCGTAAAGTGCAGGATGAAGGCCATGATCAGATTTGTGAGCAATGCAAAAGTGGTTTGCATGGGGAGGTAATGCTTTTGTGTGATAGGTGTGATAAAGGATGGCATATTTATTGTCTTTCCCCACCATTGAAGCAAATCCCTCCAGGGAACTGGTATTGTTTCAACTGCTTGAACTCTGATAGGGACAGCTTTGGTTTTGTGCCTGGGAAGCATTATTCATTGGAAGCTTTTAGACGCATTGCGGACCGGTCAAGGAGGAGATGGTTTGGACAGGGACCTGTTTCAAGGGTGCAAATAGAGAAAAAATTTTGGGAGATTGTAGAGGGATCGGTTGGTGAGGTTGAGGTTATGTATGGAAATGACTTAGATACTTCTGTCTATGGGAGTGGTTTGCCACGTGTAACTGATCAGAAACCAGAATCTATTGATGAAAAGTCATGGCAAGAATACTCTACTAACCCATGGAATCTAAATAACTTGCCCAAGTTGAAAGGCTCAATGCTTCAAGCTGTTCACCACAATATCACCGGTGTTATGGTACCCTGGCTGTATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCAATGAATTATCTACACTGGGGAGAGCCAAAGTGTTGGTACAGTGTTCCTGGCAGTCAAGCCAGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGACCTTTTCGATGCACAACCAGATTTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTACAGCATACTTCAGGAGCCTGGAAATTTTGTTATTACCTTCCCCAGATCTTATCATGGTGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCGGTCAATTTTGCTCCAGCTGACTGGCTACCATATGGTGCATTTGGAGCTGATCTCTATCAGCAGTATCACAAAACTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTATCCCAGTATGGCGATGTCGATAGCAGAGTGTCTTCTTATTTAAAAAAGGAATTGTTAAGAATATCGGATAAAGAAAAATCTTGGAGAGAGAAACTTTGGAAAAATGGTATCATTAAATCTTCTCGCTTAGCTCCTCGAAAATGTCCCCAATATGTGGGAACTGAAGAGGATCCAGCATGCATTATTTGCCAGAAATATCTCTATCTCTCTGCTGTTGTGTGCAGTTGCAGGCCATCATCTTTTGTGTGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAATCAGTAAAACTTCGTCTTCTCTATCGTCACTCACTTGCAGAATTGTATGACTTGGCATTTTCTATGGACAAATATACTTCTGAGGACAAAGCTGAGTGTAGAAGTGTCAGAAAGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAAAGGCGGCTCCTTTAATTTCGCTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTATTATTCTTCAGAATGTATTTTTGACTGATGCATTTGTTACTGCACTAAAGAAAGCTGAACAATTTCTTTGGGCTGGTTCCGAGATGGATTCTGTTCGGGATATGGTAGAGAATTTGGTTGAAGCTAAGAAATGGGCAGAAGGGATAAGAGATTGTGTGACAACAATTGAGTTATGGTTGTGTCATCAGGACTCAAGTGTAAAGAAAATTCATTTAGAATTTGTTGACGAGTTACTGAGATTTAACCCTGTACCATGCAATGAGCCTCATCATCATAAATTGAAGGAATACGCAGAAGAAGCAAGGTTGTTAATTCAAGAGATTGATACTGCTTTGTCAATATGTTCCAAGATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTACCCATCTACGTGAAAGAGAGTAAGAAATTAGAAGGGAAAATTTCTTCAACTAAGGCATGGCTGGATAGCGTTAGAAAATGCATCTCAGTGAGAGATCCTGCTGCATTAGAGGTTGATGTTCTTTACAAGTTAAAATCAGAGATTGCGGATCTTCAAGTTCAACTCCCGGAGATAGATGTGCTTCATAATCTTATAAGTCAAGCTGAATCTTGTAGTGCTCAATGTCGTGTTATGTTACAAGGTCCTATAAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACAACTTTACAGTTGGTGTACCAGAGTTGAAGCTTCTAAGGCATTATCGTTCAGACGCTGTTTCATGGGTTTCCCACTTTAATGATGTTTTAGGGAGGATTCACAAGCAGGCAGATCAACATAATGTAGTCGATGAATTAAAGAGAATTTTTGAAGAAGGTTTAACTTTGAAAATTCAAGTTGATGAATTGCCATTAGTTGAGAGTGAGCTGGAGAAGGCTAATTGCCGAGAAAAAGCTTTGAAGGCACATGACTCTAAGATGCCCCTGGAATTCATTCAGAAACTATTGCAGGAGGCCACTATGCTAGGAATTGAAGGAGAGAAACAGTTCATCAATTTATCTTGTGTGCTCGGTGTTGCCATGCCTTGGGAGGAAAGGGCTAGAGAGATTCTTTCACACAAGGCTTCCATCTCTGACTTTGAGGACATGATCAGAGCTTCAGAAAACATATTTGTTATTCTTCCTTCACTTAATGATATCAAGGAAGCATTATTGGAAGCTAATTCCTGGTTAAGGGATTCAAAGCCATATTTAGTCTCTTCTACTTGTGGATCCAATTCTGTGCGGAAAGTTGAGGACTTGCAGATGTTGGTTTCTCAATCAAAGCGTCTTAAAATATCTTTGGAAGAAAGAAGGATGCTTGAATTAGTTTTGAATAAGTGCAAAATATGGGAGCATGAAGCATGTTCTCTACTAGATGATGCTAGGTGCTTCTTTGAATCGGATGACGCTGTCCATGGAATAAGCAGCGGTTCAATGTTTAAAGTGGAAGATTTGATTGCAAGAATCCAATCTGCCATAACATCTGGTGTATCACTTGGTTTTGACTTCAGCGATATTCCTAAACTTCAAGCATCTTGTTCTACACTGCAATGGTGCAGAAGAGCCCTATCTTTTTGCACTCATTCTCCTTCTTTAGAGGATGTTTTGGAGGTTGCAGAAGGACTTTCTCATTCCTTTGTTTCTGGTTTTCTGTTGAAAGTACTGGTTGATGGGGTTGAGTGGCTGAGGAGAGCATTAGAGGGGATTTCCAGACCTCACAATTCCAGAAGATGCAAATTGACTGATGTGCAAGACATTCTTAATGATTATCAGACTATTAAAATGACCTTTGCATTAGTAAATTGTCAACTTGAAGAAGCCATTGGAAAACACAAGTTGTGGCAAGAGCAAGTGATTCAATTTTTTGGTTTAAGTTCTAGGGAACGAGCTTGGTCATCAATATTGCAGCTCAAGGAACTTGGAGAAACCATTGCCTTTAGTTGCTCAGAACTAGATTTGATTTTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAAAGATGCATGGATAACTTAGGAACTGTAGTCCAAAATGAGAATTCGCTGCTTCATGCACTGGAGAAGATAAAACAGACTCTAGATAGATCGTTGTTCATATATGGCAAGTTGCAAGATCGGAAGGAGCAAAACGTATGCATCTGTGGGTTTATTGATTCTGAAGATCAGGAATTTCTTTCTTGTTCCACTTGTATGGACTGTTATCACTTGCGGTGCATTGGACTAACAGCAAATGACACAGGCCTCAGAAACTATAAATGCCCTTATTGTGAAATCTTGAATGGTGAATCCCAATTTTCAAATGGAGGTGCCCTTCTGAGGTTTGGGAAGAAGCGTATTGAATTGAATGTTCTTATTGAACTTCAGTCTGATGCTGAACATTTCTGTCTATGGATTGATGAAAGAGATGTTTTGAACCAACTTGTTGAGAAAGCCCTTGCATGCAAATCTTGCTTGAGAGAAATAGTGAATGTTGCATCAGCTAATGTTGACGAAGATATTAGCATCATCTCTGAAAAATTGACCATTGCTATAAAGGCTAGCAAAGTGGCTGATGTCTATGATCAACATGATAATTGTGACCTTGAGCTGGCTTTAGCCAAAAACTTGTGGAAAATTCAGGTCAATAGATTGTTAAATGGTGTACAAAAGCCCACTATCCAATGGATTCAGAAGCATCTGGAAGAGGGACTGGCTATAGAAATATCACCTGAAGATCACTATATGCTGAAACTTACAAAACTGAATTGCTTGGTCTTGCAGTGGGTTGAATTAGCCATAAAGGTAGCAAATGATTCTGGGGCACTCAGTCTGGATAAAGTTTTGGAACTTGTAGTGAAAGGTGAAAACATGCCTGTTGATGTAACTGAGGAACTCAGGATGTTAAGAGCGCGATGTATGTTGTATTGCATATGTCGAAAACCCTTTGATCCAAGAAGGATGATTGCATGTTATCAATGTAATGAGTGGTATCACTTTGATTGCATGAAATTACCATGCACACAAGAGATCTACATTTGTCCTGCATGCAACCCTTGTACAGGATTGCCTACTAACCATGACAGATTAACTAGTGGAAAATTTGAGGAGCCTAAAACCCCATCTCCCAGGCATACAAACCCGAGAAAGAAACAGAAGAGAGATATGCCCAGTCTCAGTTGCAAGATGTTTGCAACCAGGAATCAAGATAGTAGTAATTTTAGTTATTCTAGTGGGATAGAATGTCTAAGAGTGGTCCGGCGGCGCTGTCTGCCACAACCCACGACGAGATCTGCAACGGCATTATTTGAGATGAGGTACATGAAGCCCTTGCAATTATTTGAATATTTGTTGAAGACAACCCAGAAGGAACGTGGAAGATTGATGGGTTTAGATGTTGGTGAAAAATATGTTGGCATAGCTCTTTCTGACTTTGATAACAAAATTGCTTCACCTTACAGTGTTCTTGTCAGGAAGAAGACAAATATTAATTTAATGGCTTCTGATTTTGAGAGTCTGATATCTGAATATTCCTTGAAGGGCTTTGTTATCGGCATCCCCTTTGATGGCAATCATCGGGTGTCTTGTGACGCTGTAAAAACGAAGGTCTTCGTTGATGCACTCTGTAGAACCAAAATGCTTGAAGATCTAAAGTATACATATTGGAATGAGAACTTCACGTCACAGACTATCGAGGTGCTATTAAAGCCTTTGAACTTGAATGATCCAGTCCTTTCCAAGACTATACTAGACAAGTTTGCTGCTGTTGAAATACTTCAGAGGTACCTGGATTTTGTTAACAGAAAAATGAAGTTGACAGCAACGGAGTAA 6003 0.4083 MGKGKPRAVEKGVVGPSTSVAASCGSTTIPAGPVYYPTEEEFKDPLEFIYKIRPEAEPYGICKIVPPKSWKPPFALDLDSFTFPTKTQAIHKLQARPAASDPKTFELEYSRFLQDHRGKKSKKRVVFEGEELDLCKLFNAVKRFGGYDKVVEGKKWGDVARFVRSSGKISDCAKHVLCQLYREHLYDYENFYNRMNRGMSRSCKKGVPEDCKSDHGVQASASKRHHQRGDSLKVKDRKVQDEGHDQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQIPPGNWYCFNCLNSDRDSFGFVPGKHYSLEAFRRIADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSVYGSGLPRVTDQKPESIDEKSWQEYSTNPWNLNNLPKLKGSMLQAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQQYHKTAVLSHEELLCVVSQYGDVDSRVSSYLKKELLRISDKEKSWREKLWKNGIIKSSRLAPRKCPQYVGTEEDPACIICQKYLYLSAVVCSCRPSSFVCLEHWEHLCECKSVKLRLLYRHSLAELYDLAFSMDKYTSEDKAECRSVRKQSSCLSALTKKVKGGSFNFAQLATEWLLQSSIILQNVFLTDAFVTALKKAEQFLWAGSEMDSVRDMVENLVEAKKWAEGIRDCVTTIELWLCHQDSSVKKIHLEFVDELLRFNPVPCNEPHHHKLKEYAEEARLLIQEIDTALSICSKMSELELLYSRACGLPIYVKESKKLEGKISSTKAWLDSVRKCISVRDPAALEVDVLYKLKSEIADLQVQLPEIDVLHNLISQAESCSAQCRVMLQGPINLKNVGLLLKEWDNFTVGVPELKLLRHYRSDAVSWVSHFNDVLGRIHKQADQHNVVDELKRIFEEGLTLKIQVDELPLVESELEKANCREKALKAHDSKMPLEFIQKLLQEATMLGIEGEKQFINLSCVLGVAMPWEERAREILSHKASISDFEDMIRASENIFVILPSLNDIKEALLEANSWLRDSKPYLVSSTCGSNSVRKVEDLQMLVSQSKRLKISLEERRMLELVLNKCKIWEHEACSLLDDARCFFESDDAVHGISSGSMFKVEDLIARIQSAITSGVSLGFDFSDIPKLQASCSTLQWCRRALSFCTHSPSLEDVLEVAEGLSHSFVSGFLLKVLVDGVEWLRRALEGISRPHNSRRCKLTDVQDILNDYQTIKMTFALVNCQLEEAIGKHKLWQEQVIQFFGLSSRERAWSSILQLKELGETIAFSCSELDLILSEVEKVENWKKRCMDNLGTVVQNENSLLHALEKIKQTLDRSLFIYGKLQDRKEQNVCICGFIDSEDQEFLSCSTCMDCYHLRCIGLTANDTGLRNYKCPYCEILNGESQFSNGGALLRFGKKRIELNVLIELQSDAEHFCLWIDERDVLNQLVEKALACKSCLREIVNVASANVDEDISIISEKLTIAIKASKVADVYDQHDNCDLELALAKNLWKIQVNRLLNGVQKPTIQWIQKHLEEGLAIEISPEDHYMLKLTKLNCLVLQWVELAIKVANDSGALSLDKVLELVVKGENMPVDVTEELRMLRARCMLYCICRKPFDPRRMIACYQCNEWYHFDCMKLPCTQEIYICPACNPCTGLPTNHDRLTSGKFEEPKTPSPRHTNPRKKQKRDMPSLSCKMFATRNQDSSNFSYSSGIECLRVVRRRCLPQPTTRSATALFEMRYMKPLQLFEYLLKTTQKERGRLMGLDVGEKYVGIALSDFDNKIASPYSVLVRKKTNINLMASDFESLISEYSLKGFVIGIPFDGNHRVSCDAVKTKVFVDALCRTKMLEDLKYTYWNENFTSQTIEVLLKPLNLNDPVLSKTILDKFAAVEILQRYLDFVNRKMKLTATE* 2001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02191 2000 ProSitePatterns Zinc finger PHD-type signature. 1701 1741 IPR019786 -
Rops1g02191 2000 SUPERFAMILY FYVE/PHD zinc finger 1696 1747 IPR011011 -
Rops1g02191 2000 MobiDBLite consensus disorder prediction 210 236 - -
Rops1g02191 2000 FunFam Putative pre-16S rRNA nuclease 1849 1998 - -
Rops1g02191 2000 Pfam jmjN domain 33 66 IPR003349 -
Rops1g02191 2000 Pfam C5HC2 zinc finger 628 679 IPR004198 -
Rops1g02191 2000 SUPERFAMILY Ribonuclease H-like 1850 1990 IPR012337 -
Rops1g02191 2000 Pfam ARID/BRIGHT DNA binding domain 105 189 IPR001606 GO:0003677
Rops1g02191 2000 SMART cupin_9 385 551 IPR003347 -
Rops1g02191 2000 FunFam Transcription factor jumonji (JmjC) domain-containing protein 18 122 - -
Rops1g02191 2000 Pfam Holliday junction resolvase 1851 1988 IPR005227 GO:0006364
Rops1g02191 2000 FunFam Predicted protein 353 556 - -
Rops1g02191 2000 CDD PHD_RSF1 248 292 - -
Rops1g02191 2000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1686 1743 IPR013083 -
Rops1g02191 2000 ProSiteProfiles ARID domain profile. 99 193 IPR001606 GO:0003677
Rops1g02191 2000 SMART bright_3 100 194 IPR001606 GO:0003677
Rops1g02191 2000 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 971 - -
Rops1g02191 2000 SUPERFAMILY Clavaminate synthase-like 361 565 - -
Rops1g02191 2000 Hamap Putative pre-16S rRNA nuclease [yqgF]. 1850 1991 IPR005227 GO:0006364
Rops1g02191 2000 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Rops1g02191 2000 Pfam PHD-finger 247 294 IPR019787 -
Rops1g02191 2000 CDD YqgF 1852 1988 IPR005227 GO:0006364
Rops1g02191 2000 Gene3D Cupin 16 131 - -
Rops1g02191 2000 SUPERFAMILY FYVE/PHD zinc finger 1437 1492 IPR011011 -
Rops1g02191 2000 SUPERFAMILY FYVE/PHD zinc finger 234 293 IPR011011 -
Rops1g02191 2000 SMART JmjN_1 31 72 IPR003349 -
Rops1g02191 2000 Pfam PLU-1-like protein 997 1182 IPR013637 -
Rops1g02191 2000 Pfam PLU-1-like protein 1144 1400 IPR013637 -
Rops1g02191 2000 Pfam JmjC domain, hydroxylase 418 534 IPR003347 -
Rops1g02191 2000 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Rops1g02191 2000 Gene3D Cupin 275 557 - -
Rops1g02191 2000 ProSiteProfiles JmjC domain profile. 385 551 IPR003347 -
Rops1g02191 2000 ProSitePatterns Zinc finger PHD-type signature. 1444 1488 IPR019786 -
Rops1g02191 2000 SMART PHD_3 247 293 IPR001965 -
Rops1g02191 2000 SMART PHD_3 1443 1489 IPR001965 -
Rops1g02191 2000 SMART PHD_3 1700 1742 IPR001965 -
Rops1g02191 2000 SMART ARID_2 99 189 - -
Rops1g02191 2000 ProSiteProfiles JmjN domain profile. 32 73 IPR003349 -
Rops1g02191 2000 SMART rnase_8s 1850 1955 IPR006641 GO:0006139
Rops1g02191 2000 MobiDBLite consensus disorder prediction 1755 1781 - -
Rops1g02191 2000 CDD ARID 101 189 - -
Rops1g02191 2000 Gene3D - 1850 1997 IPR037027 GO:0006139
Rops1g02191 2000 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Rops1g02191 2000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1433 1502 IPR013083 -
Rops1g02191 2000 SUPERFAMILY ARID-like 82 199 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02191 Rops-Chr1 43461108 43491548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02191 32 96 JUMONJI Transcription Factor Family AT1G08620 56.522 2.33e-09 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Rops1g02191 PLU-1 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02191 K11446 - gmx:100789512 3138.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02191 1 43461108 43491548 Rops1g02191 1 43461108 43491548 ECH