Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02189 ATGGATGGGAGAGAAGCTATTGCATTCTCTGGTGGGTCTGCTCCATATTATATTCATAGAGGAGGGGTTGGTGGGTCTGGTCCTGGGACTCAGCCTGGAGGGTTCCAAGCACCCTCTGGGTTCAGGGCTTTGCCAAGTGCCAGGGATGGCACTGCAGGTTCTACATTTTCAGTAGAGCCTCAACGTGCCAGTTTTAGTCATGGTGGTGTTAACGTAGGTTCCTCTCCTCCTGGTTCTGGGGTTCCTTCTTCAGGGGAGCCTGTGAAAAAGAAAAGAGGGAGGCCTCGTAAGTATGGTCCTGATGGACCTGTTTCTTTGAGACTTTCTCCCATGTCTGCTACTGCTAATTCCACCCCTGGTTCAAGCACTCCTTCTGAGAAACGGCGTAGAGGTCGCCCACCTGGAAGTGGAAGGAAGCAACAGCTAGCCAGTCTTGGTGAATGGATGAACAGTTCTGCTGGACTGGCTTTTTCACCTCATGTTATCACTGTTGGAGCTGGGGAGGACATTGTAGCAAATTTATTGTCATTTTCACAACAGAGACCAAGGGCTCTATGCATCATGTCAGGAACTGGGACAGTTTCTTCAGTCACTCTGCGCCAGCCAGCTTCTACTAGTATCAGTGCTACTTTTGAGGGCCGATTTCAAATATTGTGCTTATCTGGTTCTTATTTGGTTGCTGAAGATGGCGGACCTCGTAATAGAACAGGTGGCATGAGTGTTTCCCTTTCTAGTCCTGATGGCCATGTTATTGGTGGTGCAGTTGCTGGGCTTATTGCTGCAAGCCCCGTGCAGGTGGTGGTTTGCAGTTTTGTATATGGTGGCTCTAAGCCAAAGACACCAAAAGGGACCTCTACAAAAGATGACGATTCAGAGCCTCAGAGTAGTGATAAGTTAGCTTCTCCAAGCAGTGCACCTCCTAATCAAAACTACAGTGCTTCTGCAACAGGCATTTGGCCTGGATCAAGACCACTAGATCTGAAAAGTGCACACCCACACACTGGTATTGACTTGATGCGTGGGTGA 1026 0.4903 MDGREAIAFSGGSAPYYIHRGGVGGSGPGTQPGGFQAPSGFRALPSARDGTAGSTFSVEPQRASFSHGGVNVGSSPPGSGVPSSGEPVKKKRGRPRKYGPDGPVSLRLSPMSATANSTPGSSTPSEKRRRGRPPGSGRKQQLASLGEWMNSSAGLAFSPHVITVGAGEDIVANLLSFSQQRPRALCIMSGTGTVSSVTLRQPASTSISATFEGRFQILCLSGSYLVAEDGGPRNRTGGMSVSLSSPDGHVIGGAVAGLIAASPVQVVVCSFVYGGSKPKTPKGTSTKDDDSEPQSSDKLASPSSAPPNQNYSASATGIWPGSRPLDLKSAHPHTGIDLMRG* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02189 341 ProSiteProfiles PPC domain profile profile. 151 292 IPR005175 -
Rops1g02189 341 MobiDBLite consensus disorder prediction 296 317 - -
Rops1g02189 341 MobiDBLite consensus disorder prediction 109 124 - -
Rops1g02189 341 MobiDBLite consensus disorder prediction 278 341 - -
Rops1g02189 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 67 307 IPR039605 GO:0003680
Rops1g02189 341 MobiDBLite consensus disorder prediction 50 81 - -
Rops1g02189 341 CDD DUF296 159 271 IPR005175 -
Rops1g02189 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 156 273 - -
Rops1g02189 341 MobiDBLite consensus disorder prediction 17 142 - -
Rops1g02189 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 159 272 IPR005175 -
Rops1g02189 341 Gene3D - 159 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02189 Rops-Chr1 43435596 43439657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02189 1 341 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 51.842 6.93e-100 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02189 - - gmx:100790569 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02189 1 43435596 43439657 Rops2g00567 2 8271698 8275375 PCT