Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02183 ATGGCTAAGTGGTTAGCGTTAGCGTGCCTCAGAAATGAGGGGTGGCGTGATCTCTCGTCGCGACCTCACTACCCTTCCATGCCAAGGTATCCTAAGGGTGGTGGGACCAGCGTGGTGGGTTCAGAGTTCACCGCCCTTTTCTCTGTCATCGGAATGACTTGCTCCGCCTGCGCTGGCTCCGTCGAGAAGGCCATCAAGCGCCTCCCTGGGATTCTTGAAGCCATGGTCGATGTGCTCAACAACCGTGCACGTGTCCTCTTTTACCCCTCCTTCGTTAACGAGGAAGCAATCCGTGAGGCCATTGAAGATGCTGGGTTTGAAGCTTCTTTACTGTCAGACGCTATGAATGATAAATCTGTTCAAGTATGCCGCATCCAAATCAAAGGAATGACTTGCACATCGTGTTCCTCCACCGTTGAATCTGCTCTCGAAGCCATTCCTGGCGTGGTCAAAGCCCAAGTGGCCTTGGCAACTGAAGAAGCTGAAGTTCACTACAATCCTAATATAGTCAGCCATAACCAGATTTTGAAAGGCATAAAAGATTGTGGATTTGAAGCTGCGCTTATCAGTGCAAGTGAAGATTTGAGCAAGATAGACCTCCTTCTGGAAGGTGATCTCAGTGATCATTCCATCAAACTTGTTGAAGATTCTCTCCGTGAACTCCCGGGGGTCCTAGAGGTAGACATACATGTGGAATTGAACAAGATATCAATTTCATATAAACCAGACATGACAGGACCCAGGCACTTCATCAATGTGATTGAGGAAATAGGCTCTGGAAATTTCAAGGCAAAAATATTTCCCGAGGGAGGAGGAAGGGATAGTCATAGACAGGAGGAAATTAAAAAGTATTATAAATCTTTCTTATGGAGTTTGGTATTTACCATTCCTGTATTTCTAACCTCCATGGTGCTTATGTATGTCCCTGGAATAAAGGATTTATTAGATGCCAAAGTTGTCAATATGCTTACCGCGGGGGAGGTTGCAAGATGGGTACTTGCCACCCCAGTGCAGTTCATTTTAGGCTGGCGATTTTACTCTGGTTCTTACAAAGCATTACGCCGTGGATCAGCTAACATGGATGTTCTGATTGCCTTGGGAACTAATGCAGCATACTTCTATTCAGTATACTCTGTCCTGAGAGCTGCTACCTCTCCCCATTTCAAGGGCACTGATTTCTTTGAGACCAGTGCCATGCTCATTTCATTCATTCTGCTTGGAAAGTATCTTGAAATTTTAGCCAAGGGGAAGACATCCAATGCAATTGCCAAGCTCATGAACTTGACCCCGGACACGGCTATACTGTTAACTTTGGATAATAAAGGGAATGTTATCGGGGAGCAAGAAATTGACAGCCGATTGGTTCAGAAGAATGATGTGATTAAAATTATTCCTGGTGCTAAAGTAGCTTCAGATGGGCTTGTCATATGGGGCCAGAGTTATGTCAATGAGAGCATGATAACAGGTGAGGCACGTCCTGTTGCAAAGAGGAAAGGCGACCCTGTTATTGGAGGGACTATGAATGAGAATGGAGTGTTGCATGTTAAGGTAACGCGGGTTGGATCAGAAAGTGCTCTTTCCCAGATTGTTCGACTTGTTGAGTCAGCACAAATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTCTGGTGATCTTAATCTCATTCACAACTTGGCTTGCCTGGTATTTAGCTGGAAGATTTCATGCTTACCCAAAGTCTTGGATACCTTCTTCCATGGACAGCTTTCAGCTTGCTTTGCAGTTTGGAATATCTGTCATGGTGATAGCCTGCCCCTGTGCTTTAGGTTTAGCAACGCCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAGGGTGTACTGATCAAAGGAGGACAAGCATTAGAAAGTGCACATAAGGTGAACTGCATTGTTTTTGACAAGACAGGTACTCTCACTGTTGGGAAACCTGTGGTAGTAAATACAAAACTATTGACAAAAATGGTACTCCGGGAATTCTATGAACTTGTGGCTGCAGCTGAGGTGAATAGTGAACATCCACTGGCTAAGGCCATTGTTGAGTATGCCAAAAAATTAAGAGATGAAGAGAACCCTTCTTGGCCAGAGGCACAGGATTTTGTTTCCGTTACTGGACATGGAGTAAAGGCCACTGTTCGCAACAAGGAAATAATTGTGGGCAACAAGAGCTTGTTGGCTGACCATAACATTGCAATTCCCGATGTTGCTGAAGATATACTTGCTGAAGCCGAAAATATGGCTCAAACGGGAATTTTAGTGTCTATAAATGGGGAAGTTGCTGGGGTTTTAGCAGTATCTGATCTATTGAAACCAGGTGCTGAAGAAGTGATTTCCATTCTCAAGTCTATGAAAATTAGGAGCATCATGGTAACTGGGGACAACTGGGGAACTGCTAATTCTATTGCGAGGGAAGTTGGAATTGAAGGTGTTATTGCTGAGGCCAAGCCGGAGCAGAAAGCAGAGAAAGTGAAACAGTTGCAGGCTTCTGGGTACACGGTGGCTATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTGGGAATGGCAATAGGTGCTGGCACTGACATTGCTATTGAGGCTGCTGATATTGTCCTGATGAAGAGCAACTTGGAGGATGTGATAACTGCCATTGACCTTTCCAGAAAAACGTTTTCACGCATACGCCTCAATTACTTTTGGGCATTGGGTTATAATATGCTTGGCATCCCAATAGCTGCAGGAGCTCTTTTCCCTTCTACAAGATTCCGATTGCCACCCTGGATTGCTGGGGCTGCTATGGCTGCCTCTTCTGTCAGTGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAAGAGACCCAGGAAACTTGACTACCTTGACATACGGGGCATAAGGATCGAGTCATCCAGTGATATGATACATGCATGA 2967 0.4533 MAKWLALACLRNEGWRDLSSRPHYPSMPRYPKGGGTSVVGSEFTALFSVIGMTCSACAGSVEKAIKRLPGILEAMVDVLNNRARVLFYPSFVNEEAIREAIEDAGFEASLLSDAMNDKSVQVCRIQIKGMTCTSCSSTVESALEAIPGVVKAQVALATEEAEVHYNPNIVSHNQILKGIKDCGFEAALISASEDLSKIDLLLEGDLSDHSIKLVEDSLRELPGVLEVDIHVELNKISISYKPDMTGPRHFINVIEEIGSGNFKAKIFPEGGGRDSHRQEEIKKYYKSFLWSLVFTIPVFLTSMVLMYVPGIKDLLDAKVVNMLTAGEVARWVLATPVQFILGWRFYSGSYKALRRGSANMDVLIALGTNAAYFYSVYSVLRAATSPHFKGTDFFETSAMLISFILLGKYLEILAKGKTSNAIAKLMNLTPDTAILLTLDNKGNVIGEQEIDSRLVQKNDVIKIIPGAKVASDGLVIWGQSYVNESMITGEARPVAKRKGDPVIGGTMNENGVLHVKVTRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVILISFTTWLAWYLAGRFHAYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVNTKLLTKMVLREFYELVAAAEVNSEHPLAKAIVEYAKKLRDEENPSWPEAQDFVSVTGHGVKATVRNKEIIVGNKSLLADHNIAIPDVAEDILAEAENMAQTGILVSINGEVAGVLAVSDLLKPGAEEVISILKSMKIRSIMVTGDNWGTANSIAREVGIEGVIAEAKPEQKAEKVKQLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYFWALGYNMLGIPIAAGALFPSTRFRLPPWIAGAAMAASSVSVVCCSLLLKYYKRPRKLDYLDIRGIRIESSSDMIHA* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02183 988 SFLD C1.7: P-type atpase like 629 903 - -
Rops1g02183 988 CDD P-type_ATPase_Cu-like 286 961 - -
Rops1g02183 988 FunFam Probable copper-transporting ATPase HMA5 765 908 - -
Rops1g02183 988 SUPERFAMILY Calcium ATPase, transmembrane domain M 392 922 IPR023298 -
Rops1g02183 988 ProSiteProfiles Heavy-metal-associated domain profile. 43 109 IPR006121 GO:0046872
Rops1g02183 988 Gene3D - 614 908 IPR023214 -
Rops1g02183 988 FunFam Copper-transporting ATPase HMA5 42 113 - -
Rops1g02183 988 SUPERFAMILY HMA, heavy metal-associated domain 118 191 IPR036163 GO:0046872
Rops1g02183 988 ProSitePatterns E1-E2 ATPases phosphorylation site. 649 655 IPR018303 -
Rops1g02183 988 Gene3D - 42 111 - -
Rops1g02183 988 CDD HMA 47 109 IPR006121 GO:0046872
Rops1g02183 988 ProSiteProfiles Heavy-metal-associated domain profile. 121 187 IPR006121 GO:0046872
Rops1g02183 988 NCBIfam heavy metal translocating P-type ATPase 360 960 IPR027256 GO:0006812|GO:0016020|GO:0019829
Rops1g02183 988 SFLD p-type atpase 629 903 IPR044492 -
Rops1g02183 988 Pfam E1-E2 ATPase 446 625 - -
Rops1g02183 988 SUPERFAMILY HMA, heavy metal-associated domain 192 259 IPR036163 GO:0046872
Rops1g02183 988 Pfam haloacid dehalogenase-like hydrolase 643 865 - -
Rops1g02183 988 PRINTS Copper-transporting ATPase 1 signature 44 69 - -
Rops1g02183 988 PRINTS Copper-transporting ATPase 1 signature 70 93 - -
Rops1g02183 988 PRINTS Copper-transporting ATPase 1 signature 99 119 - -
Rops1g02183 988 PRINTS Copper-transporting ATPase 1 signature 145 166 - -
Rops1g02183 988 CDD HMA 125 187 IPR006121 GO:0046872
Rops1g02183 988 Gene3D - 202 258 - -
Rops1g02183 988 ProSitePatterns Heavy-metal-associated domain. 127 156 IPR017969 GO:0046872
Rops1g02183 988 FunFam Copper-transporting ATPase HMA5 120 191 - -
Rops1g02183 988 Pfam Heavy-metal-associated domain 47 107 IPR006121 GO:0046872
Rops1g02183 988 Pfam Heavy-metal-associated domain 125 185 IPR006121 GO:0046872
Rops1g02183 988 ProSitePatterns Heavy-metal-associated domain. 49 78 IPR017969 GO:0046872
Rops1g02183 988 SUPERFAMILY HAD-like 646 957 IPR036412 -
Rops1g02183 988 PRINTS P-type cation-transporting ATPase superfamily signature 851 870 - -
Rops1g02183 988 PRINTS P-type cation-transporting ATPase superfamily signature 874 886 - -
Rops1g02183 988 PRINTS P-type cation-transporting ATPase superfamily signature 647 661 - -
Rops1g02183 988 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Rops1g02183 988 PRINTS P-type cation-transporting ATPase superfamily signature 798 808 - -
Rops1g02183 988 ProSiteProfiles Heavy-metal-associated domain profile. 196 262 IPR006121 GO:0046872
Rops1g02183 988 Gene3D - 415 537 - -
Rops1g02183 988 NCBIfam copper ion binding protein 125 186 IPR006122 GO:0005507
Rops1g02183 988 NCBIfam copper ion binding protein 47 108 IPR006122 GO:0005507
Rops1g02183 988 NCBIfam HAD-IC family P-type ATPase 400 933 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops1g02183 988 Gene3D - 121 191 - -
Rops1g02183 988 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 3 977 - -
Rops1g02183 988 SUPERFAMILY Calcium ATPase, transduction domain A 447 533 IPR008250 -
Rops1g02183 988 Gene3D - 732 782 IPR023299 GO:0000166
Rops1g02183 988 Gene3D - 654 731 IPR023299 GO:0000166
Rops1g02183 988 FunFam Copper-transporting ATPase 1, putative 415 537 - -
Rops1g02183 988 SUPERFAMILY HMA, heavy metal-associated domain 40 112 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02183 Rops-Chr1 43392130 43396737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02183 3 980 Primary Pumps ATPases AT1G63440 75.859 0.0 1536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02183 K17686 - gmx:100816893 1617.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02183 1 43392130 43396737 Rops1g02183 1 43392130 43396737 ECH