Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02163 ATGGTGGAGGTTAAAAAGGAACTCAATGATTTGGACTTTGATTCAACTCAACGAGATATGCTCCATTTATGTCTTTCTTCGCCCAATTGCAATAACGACTGCTGCGATACTTCACTTCTGGAATCAACCCCTGTTGCAGGGAGACTTAAATCCCAAGCTAGATGCTCGGCAAAGCGATGCTGGACAAACGAAGAGGACAACCTTTTGATTGAGACAGTCAGGAAGCACGATGGAAGGAACTGGAATAAAATAGCTGCATACCTTCCTGGGCGAACCGACGTTCAATGCTTGCATCGCTGGCTAAAGGTTTTAAATCCTGATCTTGTAAAGGGATCATGGACAAAGGAGGAGGATGATTGCCTCATTGAACTAGTAAGAAAGTATGGTCTCAAGAGATGGTCTGTTATTGCAAAATCCTTACCAGGTCGTATTGGGAAGCAATGCCGAGAGAGGTGGCACAATCACCTTGATCCAGCTATAAAAAAGGATGCATGGACGGAGGAGGAGGAATCAATACTTGCTTACTATCACCAAATCCACGGCTGTAAATGGGCAGAAATTGCAAGGATTCTACCTGGGAGAACTGACAATGCTATAAAAAATCATTGGAACTGCTTGATGAAGAAGAAATTGTGTGCATCACCTTTTGTGTGTGACATAAATGTTGCCACTTCCAGTTTCTGTGCTTCTCGAATATTCAGTGGAATGGTTTCTCTCAAGCAGAGTCACTGCTTCACGCACAGTGTTGACAACTTGCCAACAAAAATGATTCTTCAAAATGCTTCTAGAGTGGAATTTTGCCCCCAAAAAAGCTATTTTGAGGGGGGAACTTTTAGGGCCTCAAGACAAGTTGAAAGCAGGTTGGTTAATTCTCTGGATATGCTTGCTACAAATTTGGATTGTTTCCCTCTTGCCACTCCTGTTACTTGTTGTGAGGCCTATAAATCTCCCAAACGACAAAAGGTTTCTTCTTCAGAAGCAAAGTTTATTGTGGGTGATGAATCAGACAGTCCCCATTTGAACTACTCAAAATCAGCTAATCATGAGAAGAAAGGTCAAGTTGGAAGGGAAAGCAACAACAAAGTCAACAGTATGCCAGATAATGCAAATGGCACAAATAACATATATGATTGTGTTCCCGTTGAACTCCCCCTGGTGGAAGATTTGGTGTCCCCCACAGAACTAAACGAATGTCCACGTCCAAAAACACACATCGGATGCGTGGAAAATAGAGGTTGTCGTCATATTCCCCCAACGTCTATACTCGGGAATTACATAGGTGGCGTCAGCCCAGAATCTGTACTAAGAAGCTTAGCAATGACATATGAGAATGTTCCTTCTATTATTAGGAAAAGACTTTCACGAAGGCGCAGTTCTGACTATTGTGACAGTGCTCAAACAGCAAACACCTTTGAGAATGATCGTTTGTACTCCTGA 1437 0.4259 MVEVKKELNDLDFDSTQRDMLHLCLSSPNCNNDCCDTSLLESTPVAGRLKSQARCSAKRCWTNEEDNLLIETVRKHDGRNWNKIAAYLPGRTDVQCLHRWLKVLNPDLVKGSWTKEEDDCLIELVRKYGLKRWSVIAKSLPGRIGKQCRERWHNHLDPAIKKDAWTEEEESILAYYHQIHGCKWAEIARILPGRTDNAIKNHWNCLMKKKLCASPFVCDINVATSSFCASRIFSGMVSLKQSHCFTHSVDNLPTKMILQNASRVEFCPQKSYFEGGTFRASRQVESRLVNSLDMLATNLDCFPLATPVTCCEAYKSPKRQKVSSSEAKFIVGDESDSPHLNYSKSANHEKKGQVGRESNNKVNSMPDNANGTNNIYDCVPVELPLVEDLVSPTELNECPRPKTHIGCVENRGCRHIPPTSILGNYIGGVSPESVLRSLAMTYENVPSIIRKRLSRRRSSDYCDSAQTANTFENDRLYS* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02163 478 CDD SANT 61 104 IPR001005 -
Rops1g02163 478 Pfam Myb-like DNA-binding domain 162 204 IPR001005 -
Rops1g02163 478 Pfam Myb-like DNA-binding domain 110 156 IPR001005 -
Rops1g02163 478 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
Rops1g02163 478 Gene3D - 57 109 - -
Rops1g02163 478 ProSiteProfiles Myb-like domain profile. 105 156 IPR001005 -
Rops1g02163 478 CDD SANT 112 156 IPR001005 -
Rops1g02163 478 Gene3D - 163 219 - -
Rops1g02163 478 FunFam Transcriptional activator Myb isoform A 110 162 - -
Rops1g02163 478 SUPERFAMILY Homeodomain-like 56 111 IPR009057 -
Rops1g02163 478 SMART sant 109 158 IPR001005 -
Rops1g02163 478 SMART sant 57 106 IPR001005 -
Rops1g02163 478 SMART sant 161 209 IPR001005 -
Rops1g02163 478 ProSiteProfiles Myb-like domain profile. 157 207 IPR001005 -
Rops1g02163 478 FunFam Transcriptional activator Myb isoform A 57 109 - -
Rops1g02163 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 160 IPR017930 -
Rops1g02163 478 MobiDBLite consensus disorder prediction 333 369 - -
Rops1g02163 478 CDD SANT 164 207 IPR001005 -
Rops1g02163 478 Gene3D - 110 161 - -
Rops1g02163 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 211 IPR017930 -
Rops1g02163 478 SUPERFAMILY Homeodomain-like 107 203 IPR009057 -
Rops1g02163 478 PANTHER MYB PROTEIN-RELATED 58 129 - -
Rops1g02163 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 104 IPR017930 -
Rops1g02163 478 ProSiteProfiles Myb-like domain profile. 61 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02163 Rops-Chr1 43175787 43179105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02163 57 211 MYB Transcription Factor Family AT5G02320 69.677 3.46e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g02163 Myb_DNA-binding 2.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02163 - - aprc:113869477 583.178