Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02162 ATGGCGCCATTACCGGTGGAGCAAACCGGTGAATCAGCACCGACGGACTCGCAGAGATCCATTCCGACGCCGTTTCTGACGAAAACGTATCAGCTTGTGGATGATCCCTCTGCTGATGACCTAATTTCATGGAACGAAGATGGCACAAGCTTCATAGTTTGGAGACCAGCTGAATTCGCTCGAGATTTGCTTCCCAAGTATTTCAAACACAACAACTTCTCCAGTTTCGTCCGTCAGCTCAACACCTATGGATTTCGTAAGGTTGTCCCTGACCGTTGGGAATTCGCCAATGACTGTTTCCGGCGAGGGGAGAGAGGTTTACTTCGTGACATACAGCGGCGGAAAATAACTCTGGCGGCGGCGACGACGTCCAATACGGTGACGGTGGCTTTGGCGGCACCGGCGATAGGGGTGTCCCCAACAACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGCACAACATAGTAATACAGTGCACCGCACCACAAGTTGCACCACTGGGCCCGAGCTTTTAGAAGAGAATGAAAGGCTTAGGAAAGAGAACATGCAACTGAGTAACGAGTTGAGTCAATTGAAGGGTCTGTGTAGTAACATACTCTCTTTGATGACCAATTATACTTCTGGTTTTACTCGCCAACTAGAATCTTCTACTGCTAGTGCTGCGAGGGCAGTGCCTCTACCCGAAGGGAAAGCGTTGGAGCTTTTACCTACAAAGCAGCATGTTTCATTGGCTGAGGATAATGTGCATGTGGGTGGCGCTGCCAGTGTCACGCCGTGTGAGACGGCGAATGCGGCGGAAGCGGAGGTTCCCAGGTTGTTTGGGGTTTCAATTGGGATGAAAAGATGTAGGACAGAGAGTGAGGCAGAAATGGAGAGAGAGGTACAGAATCTAACGCAAACACAAACACAATCATCGCCGGAATCAGATCCTGGGTCAGATGTGAAATCTGAACCGCTTGATGGTGATGAATCGGATGATCAGGAGCCTCGTTGGTTGGAGCTTGGGAAATAA 1029 0.5024 MAPLPVEQTGESAPTDSQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERGLLRDIQRRKITLAAATTSNTVTVALAAPAIGVSPTTSGDEQVLSSNSSPIAAQHSNTVHRTTSCTTGPELLEENERLRKENMQLSNELSQLKGLCSNILSLMTNYTSGFTRQLESSTASAARAVPLPEGKALELLPTKQHVSLAEDNVHVGGAASVTPCETANAAEAEVPRLFGVSIGMKRCRTESEAEMEREVQNLTQTQTQSSPESDPGSDVKSEPLDGDESDDQEPRWLELGK* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02162 342 Gene3D - 17 115 IPR036388 -
Rops1g02162 342 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 297 IPR027725 -
Rops1g02162 342 Coils Coil 173 200 - -
Rops1g02162 342 MobiDBLite consensus disorder prediction 290 342 - -
Rops1g02162 342 MobiDBLite consensus disorder prediction 1 22 - -
Rops1g02162 342 FunFam Heat stress transcription factor B-4 17 115 - -
Rops1g02162 342 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops1g02162 342 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Rops1g02162 342 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops1g02162 342 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops1g02162 342 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops1g02162 342 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops1g02162 342 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops1g02162 342 MobiDBLite consensus disorder prediction 299 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02162 Rops-Chr1 43162894 43164988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02162 16 342 HSF AT4G11660 51.884 3.47e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Rops1g02162 HSF_DNA-bind 2.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02162 K09419 - gmx:100791020 531.176