Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02161 ATGGCGACGACTAGGTCCCCGAACCATTCCTCCGAGGACATCGTCGATTCGACGCCGTTGCTGGCGAATTCCGGCGGCTCCTCCGACGAACTCAACTCCGGTCGTCGATTCGTCCGGAGACAGAGGCTTCTTCAGGCGGCGCGGTTTCTCCGGCAAGCTAGTGGACGGAGGATGATGCGTGAACCCTCGGTGGTAGTTCGAGAAGCTGCGGCGGAGCAATTGGAGGAGAGACAAAGCGATTGGGCTTATTCGAAGCCGGTTGTGATCCTCGATATCGTTTGGAACTTCGCGTTCGTTGTTGTGGCGGCCACCGTGATGATTTTGAGTCGAAGTGAAGCACCGGATATGCCTCTGAGGTTGTGGATTGCAGGTTACGCTTTGCAATGCATTCTTCACATGGTTTGTGTTTGCGTTGAATATAGGAGGCGAAGAAGGTACCAACGAAACCTGAACACAGTGTCAGGGCAAGATAGGGTTGGTACTAGCAGTGGGAATTTGAGTTCTGCTTCAAGGGAAGGTTCTCGTTCTGGTTCTTCTCAGTATGTTTCATTGGCGCAGTTCGATGAGGAGGGTACTAGTGTTGCAAAGCATTTGGAATCAGCCAATACTATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAGCTTTAGCCCAAGATTCTCCTCAGCTTTACTGGCTATGTATAATCTTCCTGGGTTTTGATGTTTTCTTTGTCGTATTCTGTGTTGCACTGGCATGTATCATTGGTATCGCTGTTTGCTGTTGTCTGCCATGTATCATTGCACTTCTTTACGCAGTTGCAGACCAGGAAGGGGCATCAAAAGAAGACATTGAGCAGCTGTCAAAATTTAAATTCCGAAGAATTGAAAGTAACGAGAAACTTACTGGTAATACAGAAGGACCTGTTGGAGGAATAATGACCGAATGCCGGGCTGATTCACCTATCGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGACGATGGGGTTGAACTAAGAGAACTCCCTTGTGGTCACCATTTTCACTGTACCTGTGTGGATAAATGGCTGTATATTAATGCTACTTGCCCCCTCTGCAAGTATAACATCTTGAAAAGTAGCAACCTTGGTCAAGAGGAAGTGTAG 1170 0.4761 MATTRSPNHSSEDIVDSTPLLANSGGSSDELNSGRRFVRRQRLLQAARFLRQASGRRMMREPSVVVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVMILSRSEAPDMPLRLWIAGYALQCILHMVCVCVEYRRRRRYQRNLNTVSGQDRVGTSSGNLSSASREGSRSGSSQYVSLAQFDEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIESNEKLTGNTEGPVGGIMTECRADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCTCVDKWLYINATCPLCKYNILKSSNLGQEEV* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02161 389 MobiDBLite consensus disorder prediction 1 31 - -
Rops1g02161 389 Pfam Ring finger domain 333 375 IPR001841 -
Rops1g02161 389 SMART ring_2 334 374 IPR001841 -
Rops1g02161 389 SUPERFAMILY RING/U-box 324 381 - -
Rops1g02161 389 MobiDBLite consensus disorder prediction 1 32 - -
Rops1g02161 389 MobiDBLite consensus disorder prediction 156 177 - -
Rops1g02161 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 387 IPR013083 -
Rops1g02161 389 ProSiteProfiles Zinc finger RING-type profile. 334 375 IPR001841 -
Rops1g02161 389 FunFam E3 ubiquitin-protein ligase At1g12760 320 385 - -
Rops1g02161 389 PANTHER TARGET OF ERK KINASE MPK-1 54 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02161 Rops-Chr1 43106828 43113021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02161 1 382 C3H Transcription Factor Family AT1G68070 47.792 2.56e-118 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02161 - - gmx:100790497 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04159 2 75761146 75765771 Rops1g02161 1 43106828 43113021 PCT