Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02160 ATGGGGAAGGCATCAAAATGGTTTCGTGGGCTTCTCGGTCTGAGAAGACCAGAAGAGTCACCGTCTGCCACCGCTGCCTCAGCTCCTAAACCACCCAAAGAGAAACGCCGATGGAGCTTCGTTAAGTCTTACAGAGAAAACAACAACAACCACCACCACCATGCCACCGTGGAAGGTGCCGATCCCGACAAACACGCCATGGCAGTGGCAGCGGTTGCCACTGCCATGGCTGAGGCCGCCGTCGCTGCTGTTCACGCGGCAGCCGCCGTTGCCAGTGGCAGGAATGCTGCCGGAGGCATTAGTCGCGAAGAATGGGCAGCCGTTAAGATTCAAGCCGCGTTTCGGGGCTGTTTGGCAAGGAAAGCGTTGCGAGCGTTAAAAGGATTGGTGAAGTTACAGGCATTGGTGAGAGGTCACATTGAGAGGAAGCGCACAGCAGAGTGGCTGCAAAGAATGCAAGCACTCTTCCGTGCACAGGCCCTAGTTCGTGCTGGGCGAACCCAAAATCTACATTCCTCATATTGGAATGCAAAGTCATCCTCTGGCCACCTTCATGGTCCAGCATCACCAGACATATTTGAAAGCCCAACCAGATATCGGAGCAAAACATGTGATCGGTCATCGTCAGTCCTCAAGAGAAACAGCTCCAAATCCCATGTCCAGATCAATGGCAATCTAGAGAAATGTGGAAGTAGATCAGATTTTAGGGTAGACAAACGATCATGGATGAGAACTTGTAGCATGGATGATGAAAGAAGCGTCGGGATTCTTGAAATTGAACCTGGAAAACCACACATCAAATCAAGACGTAGAAACCTCTCTTACTCCTCGAGTCAACCTTTGGTTTCTGATCATTACAGTCAGAGTTTGACCACCACCACCACAAAGGACTCAACATCTCATCAATTAGGTCAAAGTCCATCTTCTTGTGAAGTTCAGTCTTACAGCCCTCTAAAAATCATTGAGGCTGAGGAGAACTCATTCTATGCTGCTGACACTAGTCCTCAAATTTCATCTGCCTCTTCTAAAGATGGTGGCTCCAAAACAAGTCCTTTCACTCCTACCAGGAGTGATGGCTCAAGAAGCTATCTTAGTGGTTGTTCTGACTATCCAAGTTACATGGCTTACACCGAGTCTTCTAAGGCAAAGGTAAGATCTCTTAGTGCTCCAAAACAGAGGCCCCAGTACGAGAGGTCTAGTTCATCTGACAGGTACTCGCTTCATCGATTTGATGAGCCAAAATTGGCCACACAAAGGGTATCTGCTTTGCAAGCAAGTTTCACTAGCAAAGCCTATCCTGGTTCTGGTCGTTTGGACAAGCTTGGTTTGCCTGTGGAGTATTGA 1344 0.4874 MGKASKWFRGLLGLRRPEESPSATAASAPKPPKEKRRWSFVKSYRENNNNHHHHATVEGADPDKHAMAVAAVATAMAEAAVAAVHAAAAVASGRNAAGGISREEWAAVKIQAAFRGCLARKALRALKGLVKLQALVRGHIERKRTAEWLQRMQALFRAQALVRAGRTQNLHSSYWNAKSSSGHLHGPASPDIFESPTRYRSKTCDRSSSVLKRNSSKSHVQINGNLEKCGSRSDFRVDKRSWMRTCSMDDERSVGILEIEPGKPHIKSRRRNLSYSSSQPLVSDHYSQSLTTTTTKDSTSHQLGQSPSSCEVQSYSPLKIIEAEENSFYAADTSPQISSASSKDGGSKTSPFTPTRSDGSRSYLSGCSDYPSYMAYTESSKAKVRSLSAPKQRPQYERSSSSDRYSLHRFDEPKLATQRVSALQASFTSKAYPGSGRLDKLGLPVEY* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02160 447 MobiDBLite consensus disorder prediction 381 401 - -
Rops1g02160 447 MobiDBLite consensus disorder prediction 262 310 - -
Rops1g02160 447 MobiDBLite consensus disorder prediction 271 310 - -
Rops1g02160 447 PANTHER IQ-DOMAIN 5-RELATED 1 407 - -
Rops1g02160 447 SMART iq_5 102 124 IPR000048 GO:0005515
Rops1g02160 447 SMART iq_5 125 146 IPR000048 GO:0005515
Rops1g02160 447 MobiDBLite consensus disorder prediction 177 198 - -
Rops1g02160 447 Pfam IQ calmodulin-binding motif 130 144 IPR000048 GO:0005515
Rops1g02160 447 Pfam IQ calmodulin-binding motif 105 124 IPR000048 GO:0005515
Rops1g02160 447 MobiDBLite consensus disorder prediction 1 36 - -
Rops1g02160 447 ProSiteProfiles IQ motif profile. 103 131 IPR000048 GO:0005515
Rops1g02160 447 MobiDBLite consensus disorder prediction 381 407 - -
Rops1g02160 447 MobiDBLite consensus disorder prediction 334 363 - -
Rops1g02160 447 Pfam Protein of unknown function (DUF4005) 334 412 IPR025064 -
Rops1g02160 447 Gene3D - 101 156 - -
Rops1g02160 447 ProSiteProfiles IQ motif profile. 127 154 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02160 Rops-Chr1 43086287 43090139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02160 82 447 IQD Protein Family AT4G23060 40.625 2.62e-51 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02160 - - qlo:115970044 439.113