Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02159 ATGGACGGCGAGGAGAGAGAAAATTGTGCTTACCAAGTTCTGGTGGATCGGTGTCGGAGCTTGGAGGAGAAACAAGCTAATTTGAGGGAACAGTTCGATGAGCTTGTGCAGGAGAATAAGCTCACGGTAAGGGACGATAAAGAGGTGATCGAAGATTCAACTAAGGGTTTTCTTTCCGGTTTCTTCTTCTCTGGAAGTCCCTATGCTAGCATCTTGAAATGCATGGGCCACGCCGTTTATGTCCATAGAGTTTCCTCCGGCGAGATTATATACTGGAATCACTCGGCGGAAATTCTGTATGGATGGAAGGACTACGAAATCATTGGACAAAGAGTAACTCAGTTCCTAATTGCTGAGGAATATTATGCATCTCTACAAAAAATTCTAGAAAGATTGATCACAGGAGTACCATGGTCTGGGCAGTTTCCTTTCAAGAAGAGGTCTGGTGAAGTATTTATGGCAATGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTAGTTGGTGTTATCACTGTTTCAAGTGATGCAGCTGTGTTTAATTCTATAGATTCGGAAAATCGAAGAACTTACCAATCTGGTGCCAATGGCCAACCTGGAGTACAGAGGTTAAACTTAAAAAGGATTCAGTGGCCTCCACGGCCGTTGATTGCACCAGTGCCACAAATTGCATCATCTGTTTCAAATCTGGCATCAAAAATTCTCCCAAACTGGCATACAGATGACACAGTTTCCAGGAATACTTCAACTGATGCAGATGATGAAAAACCGGAGAAGCATAGCATATATGAAACCAAACCTCATTCCAGGTATCACCACAAGGAAAACACATCTGTCAGTGAGGCCTCCGAGAAGGATGAGTCTACCACTGAATTTGGCCGACCTTCTAAACTTGCAGATAGAGTCCTTGCTAAGCTTCAAATTGGGGGAAGTGGAAAATTTGGGAAGGATACAGGAAGTATTAAAAATAATTGCACAACTGATCATTCAGAAAGCAATAGAGTGAGTGAAAATGGTTCATCTGGAGGTTCAGTGGCGTCAACTTCACACCGGGTTGTTGCTAATGGAAGGGATAAAGAAGAAAATATCCATAAATGTAATTCTTTATTTGCTATGAAGAGAGCAGATAAAAAAGTTTGTGCACAGAGAACTTCGGGTGTTTTCAAAGTTAGTTCTACTAAACCTTTCCCAGGGGAGCGTTCTGAATGTCCTGGTGCTCCCGTTCCCCAAGACCCATTGTTAAGATTAAACTGTCAATTTAATCCAAAGAAATTGAAGCCAGAAGCTAAAATTTTGGTGATAGAAGATGAAGTGCAAAAGCAGCAAGAAGGGTTGCAATTGCCAAGTTTGAGGGAGAGTATAGGCAGCCATGAGAGTTCATCAAGCAAAGGGGATAATGAGTCAAACTCTGTTGTAGAGTGTGAAATCCACTGGGAAGACCTTCAATTAAGAGAGGAGATTGGACAAGGTTCTTATGCTGTTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAATCAAGGTTTACTTCGGGAATGGATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTATTACTTTTCATGGGAGCAGTATATTCACAGGAAAGGCTTGCCATTGTTACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAACCCTTCACAATAACAATCAGACATTAGACATCAGAAGGCGTTTAAGGATGGCTCTTGATGTTGCTAGGGGAATGAATTATCTTCATCGTAGAAATCCGCCAATTGTTCATAGAGATTTAAAGTCTTCCAACCTGCTTGTTGATAAAAACTGGACTGTTAAGGTTGGAGACTTTGGCCTGTCAAGGTTGAAGGATGCAACTTTATTGACTACCAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAAGTCCTTCGTAATGAACCTTCAAATGAGAAGTCTGATGTGTTCAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCATGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTCGTAGGCTTTATGGATAGAAGACTGGACCTGCCGGAGGGGCTTGATCCCCATGTAGCATCAATCATCAATGACTGCTGGCGAAGTGATCCAGAACAACGCCCATCATTTGAGGAGCTAATACAGAGAATGATGTCATCAGAGAAATCAAAAGTACAAGCCAACAAATTGAGTGGCAAACCCCAAATAATTCTTCCTTCCGAAAGTGGAACAACACAAGGGAGAGGATTGGAAGAGGGGTCCCAAGCAGGGGATAGAATAGCTGGGAAATTACTGTGA 2346 0.4207 MDGEERENCAYQVLVDRCRSLEEKQANLREQFDELVQENKLTVRDDKEVIEDSTKGFLSGFFFSGSPYASILKCMGHAVYVHRVSSGEIIYWNHSAEILYGWKDYEIIGQRVTQFLIAEEYYASLQKILERLITGVPWSGQFPFKKRSGEVFMAMVTKTPLYEDGELVGVITVSSDAAVFNSIDSENRRTYQSGANGQPGVQRLNLKRIQWPPRPLIAPVPQIASSVSNLASKILPNWHTDDTVSRNTSTDADDEKPEKHSIYETKPHSRYHHKENTSVSEASEKDESTTEFGRPSKLADRVLAKLQIGGSGKFGKDTGSIKNNCTTDHSESNRVSENGSSGGSVASTSHRVVANGRDKEENIHKCNSLFAMKRADKKVCAQRTSGVFKVSSTKPFPGERSECPGAPVPQDPLLRLNCQFNPKKLKPEAKILVIEDEVQKQQEGLQLPSLRESIGSHESSSSKGDNESNSVVECEIHWEDLQLREEIGQGSYAVVYHGIWNGSDVAIKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKTLHNNNQTLDIRRRLRMALDVARGMNYLHRRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLTTKSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVILWELMTQSIPWKNLNSLQVVGVVGFMDRRLDLPEGLDPHVASIINDCWRSDPEQRPSFEELIQRMMSSEKSKVQANKLSGKPQIILPSESGTTQGRGLEEGSQAGDRIAGKLL* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02159 781 MobiDBLite consensus disorder prediction 246 294 - -
Rops1g02159 781 MobiDBLite consensus disorder prediction 239 295 - -
Rops1g02159 781 ProSitePatterns Protein kinases ATP-binding region signature. 487 508 IPR017441 GO:0005524
Rops1g02159 781 MobiDBLite consensus disorder prediction 316 357 - -
Rops1g02159 781 SUPERFAMILY PYP-like sensor domain (PAS domain) 68 176 IPR035965 -
Rops1g02159 781 ProSiteProfiles Protein kinase domain profile. 481 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02159 781 NCBIfam PAS domain S-box protein 85 176 IPR000014 -
Rops1g02159 781 Pfam Protein tyrosine and serine/threonine kinase 481 732 IPR001245 GO:0004672|GO:0006468
Rops1g02159 781 CDD STKc_MAP3K-like 487 733 - -
Rops1g02159 781 SMART serkin_6 481 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02159 781 Gene3D Transferase(Phosphotransferase) domain 1 559 762 - -
Rops1g02159 781 SMART pas_2 66 134 IPR000014 -
Rops1g02159 781 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Rops1g02159 781 MobiDBLite consensus disorder prediction 739 767 - -
Rops1g02159 781 MobiDBLite consensus disorder prediction 445 468 - -
Rops1g02159 781 CDD PAS 87 176 IPR000014 -
Rops1g02159 781 MobiDBLite consensus disorder prediction 739 781 - -
Rops1g02159 781 Pfam PAS domain 85 176 IPR000014 -
Rops1g02159 781 FunFam Serine/threonine-protein kinase isoform 1 472 559 - -
Rops1g02159 781 MobiDBLite consensus disorder prediction 317 351 - -
Rops1g02159 781 FunFam PAS domain-containing protein tyrosine kinase family protein 559 749 - -
Rops1g02159 781 SUPERFAMILY Protein kinase-like (PK-like) 469 738 IPR011009 -
Rops1g02159 781 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 255 738 - -
Rops1g02159 781 Gene3D PAS domain 79 179 - -
Rops1g02159 781 ProSiteProfiles PAS repeat profile. 86 136 IPR000014 -
Rops1g02159 781 Gene3D Phosphorylase Kinase; domain 1 474 558 - -
Rops1g02159 781 Coils Coil 11 41 - -
Rops1g02159 781 PRINTS Tyrosine kinase catalytic domain signature 594 612 IPR001245 GO:0004672|GO:0006468
Rops1g02159 781 PRINTS Tyrosine kinase catalytic domain signature 641 651 IPR001245 GO:0004672|GO:0006468
Rops1g02159 781 PRINTS Tyrosine kinase catalytic domain signature 660 682 IPR001245 GO:0004672|GO:0006468
Rops1g02159 781 PRINTS Tyrosine kinase catalytic domain signature 704 726 IPR001245 GO:0004672|GO:0006468
Rops1g02159 781 PRINTS Tyrosine kinase catalytic domain signature 555 568 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02159 Rops-Chr1 43062291 43069301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02159 1 735 MAP Kinase Kinase Kinase AT4G23050 46.968 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Rops1g02159 PK_Tyr_Ser-Thr 5.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02159 - - gmx:100813707 1181.01