Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02148 ATGGCCTCATCATCTTCTAAGAGGCACCCACTTTACCATGGAATCAGGTGCCGTGGAGGAAAATGGGTGTCTGAAATCAGAGAGCCACGTAAGGCGTCACGCATATGGCTTGGAACATTCCCGACACCGGAGATGGCGGCGGCTGCCTATGACGTGGCGGCGTTGGCCTTGAAAGGTGACAATGTCGCTCTCAACCTTCCTCAGTTAATTGGCAAGTATCAAATGCCTGTGACCAATTCTCCTGCTGATATCCGCAGTGCTGCCACTGCTGCAGCAGCATTGTTGAAAGCTGAAGCCAGCAGCAATGCTCCAATTAATGTAGCTCAGCCTGATAAGGTTAACAATAATAATGATTCTGTTGATAATGCTATCACTTCAACTTCATGGTTTGAAACTGATTTCATAGATGAGGAAGCCATATTTTGCATGCCAAGTTTGCTTGTGGACATGGCTGGGGGAATGCTTCTCTCACCTCCCAGAATGAGCCCACCACCCTCGGATAACTTGCCTGAGAAGCTAGGTGGAGAAAGTTTGTGGAGTTATTTTTGA 549 0.4791 MASSSSKRHPLYHGIRCRGGKWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGDNVALNLPQLIGKYQMPVTNSPADIRSAATAAAALLKAEASSNAPINVAQPDKVNNNNDSVDNAITSTSWFETDFIDEEAIFCMPSLLVDMAGGMLLSPPRMSPPPSDNLPEKLGGESLWSYF* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02148 182 SUPERFAMILY DNA-binding domain 11 68 IPR016177 GO:0003677
Rops1g02148 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 150 - -
Rops1g02148 182 Gene3D AP2/ERF domain 11 68 IPR036955 GO:0003700|GO:0006355
Rops1g02148 182 SMART rav1_2 11 73 IPR001471 GO:0003700|GO:0006355
Rops1g02148 182 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
Rops1g02148 182 Pfam AP2 domain 12 59 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02148 Rops-Chr1 42863247 42863795 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02148 2 181 AP2-EREBP Transcription Factor Family AT5G52020 50.273 4.51e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops1g02148 AP2 2.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02148 - - gmx:100811020 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02148 1 42863247 42863795 Rops1g02148 1 42863247 42863795 ECH
Rops2g04171 2 75963275 75964289 Rops1g02148 1 42863247 42863795 PCT