Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02145 ATGAACATTTTCAAATCACCATTTGAAGGGTTGACCTATGGCTATGGTGCGGCATCGTCTTCTGCTCAAACAGGCTCCACCAACCTTCGAGCTCACTCATATGAAAATGTGATATTAGCATCGGAGCGACCAAAGAAGCGAGCGGGGAGGAGAGTATTGAAGGAAACGAGGCACCCAGTTTACAGAGGAGTGCGGAAGAGGAACAATAACAAGTGGGTTTGTGAGATGCGAGTTCCTAACAACAACTCAAGGATTTGGCTTGGAACATACCCAACACCTGAAATGGCTGCACGGGCACATGATGTTGCTGCACTTGCACATCGGGGAAAGTCAGCATGTCTCAATTTTGCAGATTCTGCATGGAGGTTGACGTTGCCGGCATCCACCAATGCGGAGGAGATAAGAAGAGCGGCGGTGGAGGCTGCTGAATTGTTTGCGGCGGAGGATAACCACCACCAGCGGCAGCAGAGTGTTGAACATTGCAGCGTTGGGGTCATAGAAGATGCTGATAAGTCTCTACAACAGGAAGGGATGTATGTGGATCAAGTTGCAGCTGTGTCAGAATTTGAAGACTTGCATGATTTGCTTTTGAGTATTGCAGATGAGCCTTTACTGTCTCCTCCTCCTACAGCAAGAGATGGAAGGGACTGGAATGACCTGGAGATATTTGATTCTGAGATGTCATTATGGAACTTCTCAATTTGA 705 0.4766 MNIFKSPFEGLTYGYGAASSSAQTGSTNLRAHSYENVILASERPKKRAGRRVLKETRHPVYRGVRKRNNNKWVCEMRVPNNNSRIWLGTYPTPEMAARAHDVAALAHRGKSACLNFADSAWRLTLPASTNAEEIRRAAVEAAELFAAEDNHHQRQQSVEHCSVGVIEDADKSLQQEGMYVDQVAAVSEFEDLHDLLLSIADEPLLSPPPTARDGRDWNDLEIFDSEMSLWNFSI* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02145 234 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Rops1g02145 234 Pfam AP2 domain 59 108 IPR001471 GO:0003700|GO:0006355
Rops1g02145 234 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700|GO:0006355
Rops1g02145 234 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Rops1g02145 234 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Rops1g02145 234 CDD AP2 61 119 IPR001471 GO:0003700|GO:0006355
Rops1g02145 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 21 231 IPR045277 GO:0003700
Rops1g02145 234 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Rops1g02145 234 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02145 Rops-Chr1 42792391 42793575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02145 35 232 AP2-EREBP Transcription Factor Family AT1G12610 47.087 3.06e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops1g02145 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02145 - - gmx:100789097 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02145 1 42792391 42793575 Rops1g02145 1 42792391 42793575 ECH
Rops2g04172 2 75978149 75979125 Rops1g02145 1 42792391 42793575 PCT