Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02144 ATGAACATTTTCAAATCACCATTTGAAGGGTTGAACTATGGCTATGGTGCGGCATCGTCTTCTGCTCAAACAGGTTCCACCACCAACCGTCGAGCTCACTCATATGAAGTGATATTAGCATCGGAGCGACCAAAGAAGCGAGCGGGGAGGAGAGTATTGAAGGAAACGAGACACCCAGTTTACAGAGGAGTACGGAAGAGGAACAAGAACAAGTGGGTTTGTGAGATGCGAGTTCCTAACAACAACTCAAGGATTTGGCTTGGAACATACCCAACACCTGAAATGGCTGCACGGGCACATGATGTTGCTGCACTTGCACATCGGGGAAAGTCAGCATGTCTCAATTTTGCAGATTCTTCATGGAGGTTGACGTTGCCGGCATCCACCAATGCGGAGGAGATAAGGAGAGCGGCGGTGGAGGCTGCTGAATGGTTTGCGGCCGAGGATAACCACCACCAGCTGCAGCAGAGTGTTGAACATTGCAGCGTTGGGGTCATAGAAGATGCTGATAAGTCTCTACAACAGGAAGGGATGTATGTGGATCAAGTTCCAGCTGTGTCAGAATTTGAAGACTTGCATGATTTGCTTTTGAGTATTGCAGATGAGCCTTTACTGTCTCCTCCTCCTACAGCAAGAGATGGAAGGGACTGGAATGACCTGGAGATATTTGATGCTGAGGTGCCATTATGGAACTTCTCAATTTGA 705 0.4809 MNIFKSPFEGLNYGYGAASSSAQTGSTTNRRAHSYEVILASERPKKRAGRRVLKETRHPVYRGVRKRNKNKWVCEMRVPNNNSRIWLGTYPTPEMAARAHDVAALAHRGKSACLNFADSSWRLTLPASTNAEEIRRAAVEAAEWFAAEDNHHQLQQSVEHCSVGVIEDADKSLQQEGMYVDQVPAVSEFEDLHDLLLSIADEPLLSPPPTARDGRDWNDLEIFDAEVPLWNFSI* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02144 234 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Rops1g02144 234 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Rops1g02144 234 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Rops1g02144 234 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Rops1g02144 234 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
Rops1g02144 234 CDD AP2 61 119 IPR001471 GO:0003700|GO:0006355
Rops1g02144 234 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700|GO:0006355
Rops1g02144 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 19 231 IPR045277 GO:0003700
Rops1g02144 234 Pfam AP2 domain 59 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02144 Rops-Chr1 42769728 42770899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02144 36 232 AP2-EREBP Transcription Factor Family AT1G63030 45.320 1.64e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops1g02144 AP2 9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02144 - - gmx:100789097 275.018