Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02137 ATGGCTCATTTGGTTTATGGTGAATCTCCTTCCTTTGGAGACTCACACCATGGACAGGGTCAACAGGTTGTTCCGTTTCCAACCACTTCGAGTTCCTTAAGGATTTTGCTCTTACATGGAAACTTAGAAATATGGATCCACGAGGCCAGAAACCTTCCTAACATGGACACGTTTCACAAGAAAATGGGGGACATGTTCTCCATCTTACCTAAAAAACTTGGTGGCAAAATTGAAGGCCACATGTCCCATAATGTGACAAGTGATCCATATGTCACTGTCTCTGTGGCAGGTGCTGTCATTGCCAGAACCTTTGTCATCAGAAACAATGAGAATCCTGCTTGGATGCAGCATTTTAATGTCCCTGTTGCACATCTTGCTTCTGAAGTGCACTTTGTTGTAAAGGACAATGATATTGTGGGGTCACAAATCATAGGTGCTGTGGGAATTCCAGTGGAACAGTTATATAATGGTGCAAAAGTTGAGGGCTTTTTCCCTATCCTTAATGCTAGTGGGAAACCCTCTCAGGATGGAGCTGTGTTGAGTTTATCCATTCAGTACACTCCTGTTGATAAAGTTGCCCTTTATAGTAATGGAGTAGGTGCTGGTCCTGATTATCAAGGGGTCCCCGATACATACTTTCCCCTTAGAAAAGGTGGCAAGGTTACGCTTTATCAAGATGCTCATGTTCAAGACGGTTGCCTTCCCAATTTGAAGGTTGATGGGGATGTGAGTTATAAGCATGGAAGTTGTTGGCGTGACATCTTTGATGCAATAAGAGAGGCCCGTAGATTAGTGTATATTGTGGGTTGGTCTGTGTACTACAATCTTAGTCTTATTCGAGATACCAGTGATGGAAAAGATTACATTTTAGGTGACCTTCTCAAAGCCAAATCACAGGAAGGTGTTAGAGTGCTGCTCCTTGTGTGGGATGATCCTACTTCTAATAGCATGCTTGGATATAAAACGGTTGGACTTATGAACACTCATGATGAGGATACTCGCCAATTTTTCAAGAACTCTTCAGTACGAGTGCTTCTTTGCCCACGATCTGGTGGAAAAGGACATAGCTTTGTCAAAACGCAGGAAGCTGGAACAATCTATACCCATCATCAGAAGACAGTCATTGTGGATGCTGATGCAGGTCAGCATAAAAGAAAGATTATAGCTTTCATCGGAGGTCTTGATTTATGTGTGGGCCGATATGATACCCCAAACCATTCTCTCTTTAGGACTTTGCAGACAACACACAAAGATGACTTTCATAATCCTAACTTTGAGGGGCCTGTTACTGGTTGTCCAAGACAACCATGGCATGATTTGCACTCCAAGGTTGATGGTCCGGCTGCATATGACATCCTTACCAATTTTGAGGAGCGTTGGTTAAGGGCATTAAAAATGCAAAAACTTCAAAAGATGAAAAGTTCACATGATGATTCATTACTGAAAATTGATAGAATCCCTGACATTGTTAGCACTGATGAAGTTTCTTGCCTAAATGAAGATAAACTGGAGACTTGGCATGTCCAGGTCTTCCGTTCAATTGATTCCAATTCTGTGAAAGGATTTCCAAAGGAACCGAAAGAAGCTATAAGAAGGAACTTGGTTTGTGGAAAGAATGTAATGATAGACATGAGCATACATTCTGCATATGTCAAGGCAATCCGAGCTGCCCAAAAGTTCATCTACATTGAGAATCAATACTTTCTTGGCTCGTCATATAATTGGGATTCTTTCAAAGACCTCGGTGCAAACAACTTAATTCCAATGGAAATTGCGCTAAAAATAGCCAACAAAATCAAACAAAATGAGAGATTCTCTGCGTATATTGTCATTCCTATGTGGCCTGAAGGTGTACCCACAAGTACAGCTACTCAGCGGATTCTCTTTTGGCAGTTCAAAACAATGCAAATGATGTATGAAACGATTTACAAGGCCTTACAGGAGGCTGGGCTTGACAATGAGTATCAACCACAAGACTACTTGAATTTCTTTTGCCTTGGCAATCGTGAGCTCCCTGATAATGAAAACATTTCAAATGCTGTAAATCCTACTGGACAAAACACTCCTCAGGTACTCACTCAGAAGAACCAGAGATTCATGATTTATGTCCATTCAAAAGGAATGATAGTGGATGATGAATACGTGATCCTGGGGTCTGCAAACATAAACCAGCGATCCATGGAAGGCACAAGAGACACAGAGATTGCAATGGGAGCATATCAGCCTAATCATACTTGGGAAAGCAAGCAGTCTAAACCTCGTGGGCAGGTGCATGGTTATAGAATGTCACTATGGAGTGAGCATATAGGAGCTGTGGAAGAGTGTTTCGAGCAACCAGAAAGCCTTGAATGCGTAAGACGTATAAGGTCATTGAGTGAGCATAACTGGAGACAGTACGCAGCTGATGAAGTGACTGAAATGAAAAGCCATTTACTAAAATACCCACTTGAAGTTGATTCAAAGGGCAAGGTGAAGCCTCTTCTTGGCTGTGAGACATTCCCAGATGTTGGTGGGAACATAAAGGGGACATTTACAGTAATTCAAGAAAATCTCACCATCTGA 2562 0.4188 MAHLVYGESPSFGDSHHGQGQQVVPFPTTSSSLRILLLHGNLEIWIHEARNLPNMDTFHKKMGDMFSILPKKLGGKIEGHMSHNVTSDPYVTVSVAGAVIARTFVIRNNENPAWMQHFNVPVAHLASEVHFVVKDNDIVGSQIIGAVGIPVEQLYNGAKVEGFFPILNASGKPSQDGAVLSLSIQYTPVDKVALYSNGVGAGPDYQGVPDTYFPLRKGGKVTLYQDAHVQDGCLPNLKVDGDVSYKHGSCWRDIFDAIREARRLVYIVGWSVYYNLSLIRDTSDGKDYILGDLLKAKSQEGVRVLLLVWDDPTSNSMLGYKTVGLMNTHDEDTRQFFKNSSVRVLLCPRSGGKGHSFVKTQEAGTIYTHHQKTVIVDADAGQHKRKIIAFIGGLDLCVGRYDTPNHSLFRTLQTTHKDDFHNPNFEGPVTGCPRQPWHDLHSKVDGPAAYDILTNFEERWLRALKMQKLQKMKSSHDDSLLKIDRIPDIVSTDEVSCLNEDKLETWHVQVFRSIDSNSVKGFPKEPKEAIRRNLVCGKNVMIDMSIHSAYVKAIRAAQKFIYIENQYFLGSSYNWDSFKDLGANNLIPMEIALKIANKIKQNERFSAYIVIPMWPEGVPTSTATQRILFWQFKTMQMMYETIYKALQEAGLDNEYQPQDYLNFFCLGNRELPDNENISNAVNPTGQNTPQVLTQKNQRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPNHTWESKQSKPRGQVHGYRMSLWSEHIGAVEECFEQPESLECVRRIRSLSEHNWRQYAADEVTEMKSHLLKYPLEVDSKGKVKPLLGCETFPDVGGNIKGTFTVIQENLTI* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02137 853 Pfam C2 domain 40 166 IPR000008 -
Rops1g02137 853 PIRSF PLD_plant 27 853 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Rops1g02137 853 CDD C2_plant_PLD 36 187 - -
Rops1g02137 853 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 189 IPR035892 -
Rops1g02137 853 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 699 726 IPR001736 GO:0003824
Rops1g02137 853 FunFam Phospholipase D delta 241 479 - -
Rops1g02137 853 Gene3D Endonuclease Chain A 506 752 - -
Rops1g02137 853 ProSiteProfiles C2 domain profile. 23 164 IPR000008 -
Rops1g02137 853 Pfam Phospholipase D C terminal 773 843 IPR024632 -
Rops1g02137 853 Pfam Phospholipase D Active site motif 366 400 IPR001736 GO:0003824
Rops1g02137 853 Pfam Phospholipase D Active site motif 700 726 IPR001736 GO:0003824
Rops1g02137 853 SMART pld_4 365 400 IPR001736 GO:0003824
Rops1g02137 853 SMART pld_4 699 726 IPR001736 GO:0003824
Rops1g02137 853 PANTHER PHOSPHOLIPASE D 32 842 IPR015679 -
Rops1g02137 853 SUPERFAMILY Phospholipase D/nuclease 546 784 - -
Rops1g02137 853 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 365 400 IPR001736 GO:0003824
Rops1g02137 853 SMART C2_3c 41 163 IPR000008 -
Rops1g02137 853 Gene3D C2 domain 35 179 IPR035892 -
Rops1g02137 853 Gene3D Endonuclease Chain A 238 487 - -
Rops1g02137 853 FunFam Phospholipase D 513 745 - -
Rops1g02137 853 SUPERFAMILY Phospholipase D/nuclease 206 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02137 Rops-Chr1 42639073 42645525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02137 14 853 Phospholipase D Gene Family (Wang group) AT2G42010 67.898 0.0 1266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02137 K01115 - gmx:100786241 1567.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02137 1 42639073 42645525 Rops1g02137 1 42639073 42645525 ECH