Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02136 ATGCAAGAACCAAGCTTGGGGATGATGGGTGGTGGTGCTTTGAGTGGGGAGGTATCAGGTTCCGGCGATCACCACCGACAACTGAAGGCGGAGATAGCCACTCACCCTCTCTATGAACAGCTTCTAGCTGCCCACGTGGCATGTCTCCGAGTTGCCACTCCCATAGATCAGTTACCACTCATTGATGCACAGTTATCTCAGTCTCACCATCTTCTACGCTCTTATGTTTCACAACACAATCATTCTTTTTCACCTCATGACCGTCAAGAACTTGACAACTTCTTGGCACAATATTTGATAGTTTTGTGTACTTTCAAAGAACAGCTTCAACAACATGTCAGAGTCCATGCCGTCGAGGCTGTCATGGCCTGCCGTGATATCGAAAATACCTTACAAGCTCTTACAGGAGTCAGTTTGGGAGAAGGAACTGGTGCGACAATGTCAGATGATGAAGATGATATGCAGATGGATTTTTCTTTAGATCAATCTAGCGCTGAAGGGCATGACATGATGGGATTTGGTCCATTACTTCCTACAGAATCTGAAAGGTCCCTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAACAGGGTTTTAAGTCCAGAATTGAAGATGTTAGGGAGGAAATATTAAGAAAACGAAGAGCTGGGAAATTACCAGGTGACACAACTTCAGTGTTAAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAACCAAAGGAAACGTAACTGGCACAGCAACTCTCAATCTGTTACCTCTTTGAAGTCCAAACGCAAGAGAGTGTAG 873 0.4479 MQEPSLGMMGGGALSGEVSGSGDHHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYVSQHNHSFSPHDRQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDMQMDFSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRV* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02136 290 FunFam homeobox protein knotted-1-like 3 isoform X1 213 274 - -
Rops1g02136 290 Pfam Homeobox KN domain 232 271 IPR008422 GO:0003677|GO:0006355
Rops1g02136 290 MobiDBLite consensus disorder prediction 1 22 - -
Rops1g02136 290 SMART KNOX1_2 26 70 IPR005540 GO:0003677|GO:0005634
Rops1g02136 290 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 276 - -
Rops1g02136 290 Pfam KNOX1 domain 28 69 IPR005540 GO:0003677|GO:0005634
Rops1g02136 290 SUPERFAMILY Homeodomain-like 214 279 IPR009057 -
Rops1g02136 290 CDD homeodomain 215 276 IPR001356 GO:0003677
Rops1g02136 290 SMART KNOX2_2 81 136 IPR005541 GO:0003677|GO:0005634
Rops1g02136 290 Pfam KNOX2 domain 84 135 IPR005541 GO:0003677|GO:0005634
Rops1g02136 290 ProSiteProfiles ELK domain profile. 192 212 IPR005539 GO:0003677
Rops1g02136 290 Gene3D - 211 285 - -
Rops1g02136 290 ProSiteProfiles 'Homeobox' domain profile. 212 275 IPR001356 GO:0003677
Rops1g02136 290 SMART HOX_1 214 279 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02136 Rops-Chr1 42623773 42629776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02136 1 288 Homeobox Transcription Factor Family AT1G62990 79.592 4.68e-173 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops1g02136 KNOX2 2.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02136 - - gmx:100782179 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02136 1 42623773 42629776 Rops1g02136 1 42623773 42629776 ECH
Rops2g04180 2 76111719 76120609 Rops1g02136 1 42623773 42629776 PCT