Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02130 ATGGCCTCCAATGTTCTTCAAGCTTGTACTTTCTTGTTGCTTGCTTTTACAATGATGTTCACGTTCATGGGAGAGCCAGCAGTAGCTGTGATATTTCGACCCAGTCAATGGTCTCTTGCTCATGCCACCTTCTATGGTGATGAAACTGCTTCTGCCACCATGGTGCCATGCCAAAGGAAGGGAGGGCTTAGAATTTCTTTCCAAGGAAATGGGTACTGGCTATTGGTGTATATGATGAATGTGGGAGGTGGAGGAGATATTTCAAGCATGTGGGTGAAAGGAAGCAAAACAGGATGGATTAGCATGAGTCACAACTGGGGTGCTTCATACCAAGCATTTGCAACTTTGGGTGGCCAAGCTCTTTCTTTCAGGATTACTTCATACACCACCAGAGAGACCATTATTGCATGGAATGTTGCTCCTGCCAATTGGAACATGGGACTAACTTATTCCACCAGTGTCAACTTCCACTGA 474 0.4536 MASNVLQACTFLLLAFTMMFTFMGEPAVAVIFRPSQWSLAHATFYGDETASATMVPCQRKGGLRISFQGNGYWLLVYMMNVGGGGDISSMWVKGSKTGWISMSHNWGASYQAFATLGGQALSFRITSYTTRETIIAWNVAPANWNMGLTYSTSVNFH* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02130 157 Pfam Expansin C-terminal domain 65 141 IPR007117 -
Rops1g02130 157 Gene3D - 60 157 IPR036749 -
Rops1g02130 157 PRINTS Expansin/Lol pI family signature 45 61 IPR007118 GO:0005576
Rops1g02130 157 PRINTS Expansin/Lol pI family signature 99 113 IPR007118 GO:0005576
Rops1g02130 157 PRINTS Expansin/Lol pI family signature 138 152 IPR007118 GO:0005576
Rops1g02130 157 SUPERFAMILY PHL pollen allergen 59 151 IPR036749 -
Rops1g02130 157 PANTHER EXPANSIN-A15 55 152 IPR002963 GO:0009664
Rops1g02130 157 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 72 152 IPR007117 -
Rops1g02130 157 PRINTS Expansin signature 61 73 IPR002963 GO:0009664
Rops1g02130 157 PRINTS Expansin signature 73 94 IPR002963 GO:0009664
Rops1g02130 157 PRINTS Expansin signature 138 154 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02130 Rops-Chr1 42535473 42536537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02130 55 157 Expansin Gene Family AT1G12560 72.816 5.07e-51 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02130 - - gmx:100807807 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02130 1 42535473 42536537 Rops1g02130 1 42535473 42536537 ECH
Rops2g04186 2 76273718 76274495 Rops1g02130 1 42535473 42536537 PCT