Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02119 ATGAGAAGACACCGTCAAATTCATCTCTCTCATGCTCTGTTGTGTGTCATTCTGTGTTTGTTTTCATCTATTGTCAATGTCTCACCAGCAACTGAGAAAGAAATTTTACTTCAATTCAAGAGTAACATCACAAATGATCCCCACAACAGCTTGAGTTCGTGGGTTTCCAATGGAAACCCTTGCCAAGGTTACAATGGTATTTTCTGTAACTCAGAAGGATTTGTAGAAAGAATCGTGCTTTGGAACACTAGCTTGGGTGGGGTGTTGTCGCCAGCACTTTCGGGGTTGCAGAGGTTGAGGATTTTGACATTGTTTGGGAATCGCTTCGCGGGTAATATTCCAGAAGAATATTCTGATCTTCACTCATTGTGGAAGATCAATTTGAGCTCCAATGCTTTATCTGGTTCGATCCCAGAGTTCATAGGTGATTTGCCTAGCATTCGTTTTCTAGATTTGTCAAAGAATGGCTTCACTGGGGAGATACCTTCAGCTTTGTTTAGGTACTGTTACAAAACCAAGTTTGTTTCTCTTTCTCATAACAATCTTGCTGGTTCAATTCCTGCCTCGTTGGTGAATTGCTCCAACCTTGAAGGATTTGATTTTTCCTTCAACAATCTTAGTGGGGTTGTCCCTTCGCAACTTTGTGGCATTCCAAGGTTATCATATGTATCGCTGCGAAGCAACGCCTTATCAGGGAGCGTGCAACAGCTCATTTCAGCATGCCAGAGTCTGATACATTTGGATTTTGGTAGTAATAGATTCACCGATTTGGCTCCATTCAGCATCCTTCAAATGCAAAATCTTACCTATTTCAATATATCATATAATAGGTTTAGAGGACAAATTCCTGAGATCAATGCCTGTAGTGAGAGATTAGAAATCTTTGATGCTTCAGGGAATTATTTGGATGGGGTGATTCCATCCAGCATAACTAGATGTAAGAACCTAAAGCTCTTGGCCTTGGAGTTTAATGGACTGAAAGGGAGCATCCCAGTTGATATTCAGGAATTGCGAGGATTATTAGTTATCAAATTGGGTAATAATTCGATAGGTGGAATGATTCCCAAGGGTTTTGGCAACATTGAACTGCTTGAATTGCTGGATTTGCACAATCTAAACCTCATTGGAAAAATTCCAGTTGATATAAGCGATTGCAAGTTTCTTCTTGAGCTGGATGTTTCTGGTAATAACTTAGAGGGCGAGATTCCTCAGACCCTTTACAAAATGACAAATCTGGAAGCCCTTGATCTACATGATAACCGGCTTAATGGAAGCATCCCACCAAGCCTAGGAAGCCTGTCAAAGATCCAATACCTAAATCTGTCACATAATTCACTTTCTGGTTCAATTCCTCCTTCCCTTGGAAATTTAAAAAATTTGACACATTTTAATCTCTCATTCAACAATCTCTCCGGTGTCATTCCTGATATGGAAACCATACAGCATTTTGGTGCATCTGCATTTTCCAATAATCCTTTTCTCTGTGGTGCTCCTTTGGACACCCCTTGTTCAGTGAACGGAACTAGATCACCTTCAGCTCCTGGGAAGACTAGAGTTCTCAGTGTCTCTGCAATTGTTGCAATTGTGGCTGCAGCTATAATTCTTACTGGGGTGTGTTTGGTGACCATCATGAATATTAGGGCTCGACGTAGCAAAAAAGATGATGATCAGATTATGATTGTTGAGAGCACACCTCTTGGATCAACAGAATCAAATCTTATTATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAGCATTGCTTGACAAAGAGTCTTTGATAGGTGGTGGATCAATCGGCACAGTCTATAGAACTGATTTTGAAGGTGGCATCTCAATTGCAGTGAAGAAGCTTGAGACTTTGGGAAGGATCAGAAATCAGGAGGAATTTGAACATGAAATTGGGCGACTAGGCAACCTTCAACACCCTAATTTAGTGGCTTTTCAAGGTTACTACTGGTCCTCTTCAATGCAGTTGATTCTATCAGAGTTTGTCCCAAATGGGAATCTCTATGATAATCTACATGGGCTTGGCTATCCTGGAACCAGCACAAGTAGAGGTAATAGAGAATTACATTGGTCTCAAAGGTTCCAAATTGCACTTGGAACTGCAAGAGCCCTTGCCTATCTCCACCATGATTGTCGACCTCCAATTCTTCATCTCAACATTAAATCCTCTAACATACTCTTAGATGACAAGTATGAAGCTAAGTTGTCTGATTATGGATTAGGAAAATTACTTCCCATTTTGGATAATTATGGTCTGACCAAGTTCCACAATGCTGTTGGATATGTTGCACCAGAGTTGGCTCAAAGCCTGAGGCAGAGTGAGAAGTGTGATGTTTACAGTTTTGGGGTCATTCTTTTGGAGCTGGTTACAGGGAGGAAGCCTGTAGAAAGTCAAATCTCAAATGAGGTGGTGGTTTTGTGTGAATATGTGAGAGGTTTGTTGGAGACTGGCTCAGCTTCAAATTGCTTTGACAGAAATTTACTGGGCTTTGCTGAGAATGAATTAATTCAGGTTATGAGATTGGGGCTAATTTGTACTTCAGAGGATCCTTTAAGAAGGCCAAGCATGGCTGAGGTTGTGCAGGTCCTTGAGTCCATTAGAAATGGAGTGGAATCTCTTTAA 2667 0.4091 MRRHRQIHLSHALLCVILCLFSSIVNVSPATEKEILLQFKSNITNDPHNSLSSWVSNGNPCQGYNGIFCNSEGFVERIVLWNTSLGGVLSPALSGLQRLRILTLFGNRFAGNIPEEYSDLHSLWKINLSSNALSGSIPEFIGDLPSIRFLDLSKNGFTGEIPSALFRYCYKTKFVSLSHNNLAGSIPASLVNCSNLEGFDFSFNNLSGVVPSQLCGIPRLSYVSLRSNALSGSVQQLISACQSLIHLDFGSNRFTDLAPFSILQMQNLTYFNISYNRFRGQIPEINACSERLEIFDASGNYLDGVIPSSITRCKNLKLLALEFNGLKGSIPVDIQELRGLLVIKLGNNSIGGMIPKGFGNIELLELLDLHNLNLIGKIPVDISDCKFLLELDVSGNNLEGEIPQTLYKMTNLEALDLHDNRLNGSIPPSLGSLSKIQYLNLSHNSLSGSIPPSLGNLKNLTHFNLSFNNLSGVIPDMETIQHFGASAFSNNPFLCGAPLDTPCSVNGTRSPSAPGKTRVLSVSAIVAIVAAAIILTGVCLVTIMNIRARRSKKDDDQIMIVESTPLGSTESNLIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYRTDFEGGISIAVKKLETLGRIRNQEEFEHEIGRLGNLQHPNLVAFQGYYWSSSMQLILSEFVPNGNLYDNLHGLGYPGTSTSRGNRELHWSQRFQIALGTARALAYLHHDCRPPILHLNIKSSNILLDDKYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQSLRQSEKCDVYSFGVILLELVTGRKPVESQISNEVVVLCEYVRGLLETGSASNCFDRNLLGFAENELIQVMRLGLICTSEDPLRRPSMAEVVQVLESIRNGVESL* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02119 888 SUPERFAMILY L domain-like 75 164 - -
Rops1g02119 888 ProSiteProfiles Protein kinase domain profile. 600 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02119 888 Pfam Leucine rich repeat 390 446 IPR001611 GO:0005515
Rops1g02119 888 Pfam Leucine rich repeat 218 278 IPR001611 GO:0005515
Rops1g02119 888 FunFam Putative LRR receptor-like serine/threonine-protein kinase 577 676 - -
Rops1g02119 888 Gene3D Phosphorylase Kinase; domain 1 572 676 - -
Rops1g02119 888 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Rops1g02119 888 SUPERFAMILY Protein kinase-like (PK-like) 601 879 IPR011009 -
Rops1g02119 888 Gene3D Ribonuclease Inhibitor 29 189 IPR032675 -
Rops1g02119 888 CDD STKc_IRAK 606 881 - -
Rops1g02119 888 Gene3D Ribonuclease Inhibitor 215 510 IPR032675 -
Rops1g02119 888 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 677 887 - -
Rops1g02119 888 Pfam Protein kinase domain 602 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02119 888 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 29 168 - -
Rops1g02119 888 Gene3D Transferase(Phosphotransferase) domain 1 677 887 - -
Rops1g02119 888 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 252 883 - -
Rops1g02119 888 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 169 506 - -
Rops1g02119 888 SUPERFAMILY L domain-like 167 495 - -
Rops1g02119 888 SMART LRR_typ_2 337 360 IPR003591 -
Rops1g02119 888 SMART LRR_typ_2 457 480 IPR003591 -
Rops1g02119 888 SMART LRR_typ_2 409 433 IPR003591 -
Rops1g02119 888 SMART LRR_typ_2 144 168 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02119 Rops-Chr1 42448502 42452333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02119 13 887 Receptor kinase-like Gene Family AT1G62950 65.432 0.0 1131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Rops1g02119 Pkinase 3.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02119 - - gmx:100805681 1528.46