Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02112 ATGGATCCAATAACAGCACACGGGCATTCACTTCCACCTCCTTTCCACACAGCAAGAGATCTCCATCTGCACCACCAACATCAGTTCCACGCCATACAACAACAAAACACAGAAGAGGAACAAAGTGGAAGCAGTGGTGCACAGAAAAGGGAAGTGGAAGAAAACAGCAACAACAACAACAACAACAGTGAAGGGAAAGACGGAGCAGGAGCTGAAACTGAGATGTCAAGAAGACCTCGAGGAAGACCAGCAGGATCCAAGAACAAACCAAAACCACCGATCATCATCACTCGTGACAGCGCAAATGCCCTAAAAACCCATGTCATGGAGGTTGCCGACGGTTGTGACATCGTAGAAAGTGTTTCCAACTTTGCCAGGCGCCGCCAGAGAGGTGTTTGCATCATGAGTGGTACTGGCACTGTCACAAATGTAACACTCAGGCAACCGGCTTCTTCTGGTGCTGTTGTCACTCTTCATGGAAGGTTCGAGATCTTGTCACTTTCCGGATCATTCCTGCCACCACCGGCACCGCCGGCAGCGTCAGGTTTGACAATATATTTGGCTGGTGGACAAGGACAAGTTGTGGGAGGTAGTATTGTTGGGGCACTGATAGCTTCTGGGCCAGTGGTTATCATGTCAGCTTCATTTAGCAACGCTGCTTATGAGAGGCTTCCTTTGGAGGAAGAAGACCCTTCTCAGCCACTGCAAGGAGGTTCGATTGGTTCACCCAGTGGTCAGCAACAGACACAGCTTTTAGGAGATGCTACTACTCCTCCTTCACTTTTTCATGCTTTGCCTCCTAATCTTCTCAATTCTGTTCAGATGCCATCTGAGAACTTCTGGCCAACTAATCGCTCTCCCTATTGA 867 0.489 MDPITAHGHSLPPPFHTARDLHLHHQHQFHAIQQQNTEEEQSGSSGAQKREVEENSNNNNNNSEGKDGAGAETEMSRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVESVSNFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSIVGALIASGPVVIMSASFSNAAYERLPLEEEDPSQPLQGGSIGSPSGQQQTQLLGDATTPPSLFHALPPNLLNSVQMPSENFWPTNRSPY* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02112 288 SUPERFAMILY AF0104/ALDC/Ptd012-like 101 230 - -
Rops1g02112 288 FunFam AT-hook motif nuclear-localized protein 104 231 - -
Rops1g02112 288 Gene3D - 104 233 - -
Rops1g02112 288 MobiDBLite consensus disorder prediction 29 95 - -
Rops1g02112 288 ProSiteProfiles PPC domain profile profile. 101 238 IPR005175 -
Rops1g02112 288 MobiDBLite consensus disorder prediction 235 256 - -
Rops1g02112 288 MobiDBLite consensus disorder prediction 270 288 - -
Rops1g02112 288 CDD DUF296 105 216 IPR005175 -
Rops1g02112 288 MobiDBLite consensus disorder prediction 29 67 - -
Rops1g02112 288 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 218 IPR005175 -
Rops1g02112 288 MobiDBLite consensus disorder prediction 228 288 - -
Rops1g02112 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 282 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02112 Rops-Chr1 42361846 42362712 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02112 1 288 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 56.156 9.81e-88 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02112 - - gmx:100781436 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02112 1 42361846 42362712 Rops1g02112 1 42361846 42362712 ECH