Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02108 ATGGAGGGTGTTAGCAGCAGTGGTGTTACGGTGGTGGGATCGGAAGCTCCGTCGGAGTACCATGTAGCTCCGAGGACTGAAAATCCAGCTCCGGCCGTTGGATCCATCACCACCACGACGGTGCCGGCAGCTCATGGGAGTGCTCCGCCGCCGCAGCCGGCGGCAACAACGATGCCGGCGAAGAAGAAAAGGGGTCGCCCCAGAAAGTATGGACCAGATGGGTCGGTGACTATGGCTCTGTCTCCAAAGCCTATATCTTCTTTAGCTCCGCCGCCGGTGATCGATTTCTCGTCGGAGAAGCGTGGAAAAGTCCGGCCAGCTAGCTCAGTCAACAAAGCCAAATTTGAGGTGGAGAATTTAGGCGAATGGGTTGCATGCTCAGTTGGTGCTAATTTTACACCTCATATCATCACTGTTAATGCCGGAGAGGATGTTACTATGAAGATAATATCATTTTCTCAGCAAGGACCACGAGCTATATGCATTCTTTCTGCAAGTGGAATCATATCAAGCGTCACCCTTCGTCAGCCTGATTCTTCTGGAGGCACATTAACATATGAGGGAAGATTTGAAATTCTATCTTTATCTGGCTCATTCATGCTGAATGAAAGTGGTGGAACACGGAGCAGATCTGGTGGCATGAGTGTTTCTTTAGCAAGTCCAGATGGACGTGTTGTAGGCGGTGGTGTAGCTGGTCTGTTGGTGGCTGCAAGTCCTGTCCAGGTAGTGGTAGGCAGTTTTCTGGCTGGTAACCAACATGAGCCGAGGCTAAAAAAACAGAAACATGAGGTAATATCAACAACAATAACACCAACTGCAGCTGTTCCCGTGTCTACTGCTGATCCAATACCTAATCTCTCGTCTCCCTCTTCCTTCCGTGGAGATAATTGGTCTGCAATGCCAGCTAGTGCTGATACAAGGAATAACACAACTGACATTAATGTATCACTTCCTGGAGGTTAA 963 0.4933 MEGVSSSGVTVVGSEAPSEYHVAPRTENPAPAVGSITTTTVPAAHGSAPPPQPAATTMPAKKKRGRPRKYGPDGSVTMALSPKPISSLAPPPVIDFSSEKRGKVRPASSVNKAKFEVENLGEWVACSVGANFTPHIITVNAGEDVTMKIISFSQQGPRAICILSASGIISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMLNESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEPRLKKQKHEVISTTITPTAAVPVSTADPIPNLSSPSSFRGDNWSAMPASADTRNNTTDINVSLPGG* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02108 320 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 292 IPR039605 GO:0003680
Rops1g02108 320 MobiDBLite consensus disorder prediction 1 84 - -
Rops1g02108 320 MobiDBLite consensus disorder prediction 31 45 - -
Rops1g02108 320 MobiDBLite consensus disorder prediction 299 320 - -
Rops1g02108 320 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 250 - -
Rops1g02108 320 CDD DUF296 133 224 IPR005175 -
Rops1g02108 320 ProSiteProfiles PPC domain profile profile. 129 272 IPR005175 -
Rops1g02108 320 FunFam AT-hook motif nuclear-localized protein 1-like 134 265 - -
Rops1g02108 320 Gene3D - 134 267 - -
Rops1g02108 320 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 247 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02108 Rops-Chr1 42283658 42289011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02108 8 317 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 62.242 4.77e-126 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02108 - - gmx:100801730 462.996