Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02098 ATGTATGAACAAGGTGGAAGCTCAAATGCAAGTGAGAGTATAGTCAGAACACAAACACCACAGTCACATGATGCTTCTTTTTCTTTGAGGTTTACAGATATCAATCTTGTGAGGAGTAAAAGCATGAGACAACCAAAAATCAATATCAGTGGTGATTTGAAAACACTAAAGAAGAAGCTCGGAGCCGCAGAAAGCAAGTTTTTAATTTATGAGCGTTTGTCTTTGAATTTAACTAATTCTCCTTGGTTGCCTCAATTGCTCATTACAGCAGTTGAAATAGACAAAACCAGAGCTATTTTAGAGAATCAAATAAAAGGAAAAGGTGGAGTGCATGTAAACGCAGGAAAAGGAAAGCCTGGAGGCACTTCAGTGAACGTTGGGAGAGGTGGAGTAAATGTACACACAGGAAAAGGAAAAGGAAAGGCAGTGTATGTTGGAGTGGGGTGTTCTCCATTTCTTTACAAATATGCTGCCACCGAGACCCAATTACATGATAACCCCAAAGTAGCCCTGTTCTTCTTGGAAAAGGACTTGCATCATGGAACAAAATTGGACTTGCACTTCACTAAAACCTCAAATGCACCCACATTCTTGCCTCGCCAAGTTGTTGATTCGATACCCTTTTCATCAAACAAGGTGGAAGACATACTTAACAAGTTTTCTGGGAAGCCTGGGACAGAGGAGGCTCAGATTTTGAAGAACACCATCACTGAGTGTGAAGAGCCTGGTATCAAAGGAGAGGAAAAGAGTTGTGTAACTTCACTTGAGTCCATGGTTGATTTCTCCACTTCCAAGCTTGGGAATAATGTTGAGGCCGTTTCTACTGAAGTGAACAAAGAGCTCAGTATTGGATATCTGCACGGCAATGAAGCTAGCAAACCTACAATAGTGTATCAGAATATTTCTGTGGAAAATGTTATCCTTGATCATCAGTTTGAGCCATTGATCATGGATGCTGGACTTCCTAAGCTTCTTGCAGATGATGTTGTTTTCTCTGCTCTAAAAGTAAGTGCTGCCATGGGATACCTTGCTCCTGAATACATTACTACTGGACGGTTTACTGAGAAGAGTGACATATACGCATTTGGTGTTATTGTTCTTCAAGTTCTATCTGGCAAGAAGGCAATAGGTGGTTCAATAAGAATGGCATTTGAGTCTTGA 1161 0.4074 MYEQGGSSNASESIVRTQTPQSHDASFSLRFTDINLVRSKSMRQPKINISGDLKTLKKKLGAAESKFLIYERLSLNLTNSPWLPQLLITAVEIDKTRAILENQIKGKGGVHVNAGKGKPGGTSVNVGRGGVNVHTGKGKGKAVYVGVGCSPFLYKYAATETQLHDNPKVALFFLEKDLHHGTKLDLHFTKTSNAPTFLPRQVVDSIPFSSNKVEDILNKFSGKPGTEEAQILKNTITECEEPGIKGEEKSCVTSLESMVDFSTSKLGNNVEAVSTEVNKELSIGYLHGNEASKPTIVYQNISVENVILDHQFEPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKKAIGGSIRMAFES* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02098 386 MobiDBLite consensus disorder prediction 1 21 - -
Rops1g02098 386 ProSiteProfiles Protein kinase domain profile. 141 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02098 386 Pfam Protein tyrosine and serine/threonine kinase 294 374 IPR001245 GO:0004672|GO:0006468
Rops1g02098 386 SUPERFAMILY Protein kinase-like (PK-like) 283 377 IPR011009 -
Rops1g02098 386 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 98 279 IPR044816 -
Rops1g02098 386 SMART BURP_2 170 354 IPR004873 -
Rops1g02098 386 Gene3D Transferase(Phosphotransferase) domain 1 280 385 - -
Rops1g02098 386 ProSiteProfiles BURP domain profile. 172 386 IPR004873 -
Rops1g02098 386 Pfam BURP domain 171 288 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02098 Rops-Chr1 42042764 42048204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02098 283 376 Receptor kinase-like Gene Family AT2G48010 41.489 1.30e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Rops1g02098 BURP 1.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02098 - - gmx:100799031 250.366