Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02097 ATGAAGTCCTTCCATCTTCTCGTTTCTCTTTCTCTGTTTCTACTGGTTGCATTTCCTCAGATGGTTCGTGGAAATGCAGAGCTAAGAGCTTTGATGGACTTGAAATCCTCTCTGGACCCAGAGGGAAAGATCCTTAGCTCGTGGATCAGTGATGGTGACCAATGCAGTGGCTCTTTCGTTGGGATTGCATGCAACGAGCACAGGAAAGTGGCTAACATTTCCTTGCAGGGAAAGGGCCTTTCGGGTTGGCTCTCTCCAGCTCTGGCTGAACTCAAGTGCTTGTCAGGCTTATACTTGCATTACAACAATCTTTCTGGTGAGATACCACCACAGATTTCAAATCTCACTGATCTGGTTGATCTCTATCTCGATGTCAATAGTCTATCTGGAACCATCCCCCCAGAGCTTGGCAATATGGCTAGTCTCCAAGTACTCCAGTTGGGCGATAATCAGTTGGTGGGGAATATACCTACACAGATGGGTTCCTTGAAGCAGCTTAGCACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCTCTTAGCTTGGGGAACTTGGAGAGGCTAAGCAGGCTAAATTTGAGCTTCAACAACTTCAGTGGTGCGATTCCCGCAACATTAGCCCGTATTGCAAATTTGAAAGTTCTAGATATTCAAAACAATTCTCTATCAGGAATTGTTCCTTCTGCATTGAAGAGACTTGGGGAAGGATTCCAAGGTGCAAACAACCCAGGTTTATGTGGAGTTATGTTTTCTACATTGAGAGCTTGCAACAAAGATCAAGATTTAAAGGTTAACCATATTGATACCTCAGATCAAGACCAACCCAAAATGAGTAATCCTGCAAAGGCTCTTCCGGAGCCTGCAAATATTCAGCTGCATTGTAATCAGACCCATTGCTCAAAACCAAGAAGGTTTCCTCAAACTGTCATCACAGCAGGTGTCATAACTATCACTCTCACATTCATAGGTGCTGGATTTTTCACATTTGTCAAATACCGCCGTCAAAAGCAGAGGATTACATCAAATTCTTCTGAAGGGAAACTTAGTCCTGACCAGCCTAAAGAGTTCTACAGAAAAAGCCCATCTGCACTTGTTAATCTTGAGTATTATAATGGATGGTATCCATTATCTGATGATCAAAATGCTGGTGGATTATCCAATGAATATTTAAACCAATTCAGGTTTAATGTAGATGAGGTTGAATCTGCAACACAGTACCTTTCCGAAGCCAATTTATTGGGTAAGAGCAAATTCTCAGCAGTTTATAAAGGAGTTCTCAGAGATGGTTCTCTTGTGGCTATTAGAAGCATTAACGTGACATGCTGCAAAGCCGAGGAAGCTGAATTTGGAAAGGGGTTAACCTTATTAACCTCTCTGAGACATGAAAACCTTGTGAGGCTAAGAGGTTTCTGTTGCTCAACTAGTAGAGGTGAATGTTTCCTTATCTATGACTTTGCCACCATGGGTAACCTGTCTCAATATCTTGACATAGAAGATGGAACTGGCCATGTGCTTGACTGGTCCAAGAGGGTTTCTATCATCAAGGGCATTGCAAAAGGCATTGGATATCTGCACAGCAATGAAGCTAGCAAACCTACAATAGTACATCAGAACATTTCTGTGGAAAATGTTCTCCTTGATCATCAGTTTAAGCCATTGATCATGGATGCTGGACTCCCTAAGCTTCTTGCGGATGATGTTGTTTTCTCTGCTCTAAAAGTAAGTGCTGCCATGGGATATCTTGCTCCTGAATACATTACTACTGGACGATTTACTGAGAAGAGTGACATATACGCATTTGGGGTTATTGTTCTTCAAGTTCTATCTGGCAAGAAGGCAATAGGTGGTTCAATACGTATGGCATTTGAGTCTTTAAGATTTGATGATTTTATTGACACAAATCTTAGGGGAAGATATTCTAAATCTGAAGCAGAGACGCTTTCAAAGCTTGCAATGCTATGTATCGATGAGCTTCCTGACCAAAGACCAACTACGATGGAAGTGATTCAGGAGCTAAGCGTGCTTGTTCATGATGATCTACTACTATCTATTGGCATTAAGAGAGGTTGA 2076 0.4181 MKSFHLLVSLSLFLLVAFPQMVRGNAELRALMDLKSSLDPEGKILSSWISDGDQCSGSFVGIACNEHRKVANISLQGKGLSGWLSPALAELKCLSGLYLHYNNLSGEIPPQISNLTDLVDLYLDVNSLSGTIPPELGNMASLQVLQLGDNQLVGNIPTQMGSLKQLSTLALQYNKLTGQIPLSLGNLERLSRLNLSFNNFSGAIPATLARIANLKVLDIQNNSLSGIVPSALKRLGEGFQGANNPGLCGVMFSTLRACNKDQDLKVNHIDTSDQDQPKMSNPAKALPEPANIQLHCNQTHCSKPRRFPQTVITAGVITITLTFIGAGFFTFVKYRRQKQRITSNSSEGKLSPDQPKEFYRKSPSALVNLEYYNGWYPLSDDQNAGGLSNEYLNQFRFNVDEVESATQYLSEANLLGKSKFSAVYKGVLRDGSLVAIRSINVTCCKAEEAEFGKGLTLLTSLRHENLVRLRGFCCSTSRGECFLIYDFATMGNLSQYLDIEDGTGHVLDWSKRVSIIKGIAKGIGYLHSNEASKPTIVHQNISVENVLLDHQFKPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKKAIGGSIRMAFESLRFDDFIDTNLRGRYSKSEAETLSKLAMLCIDELPDQRPTTMEVIQELSVLVHDDLLLSIGIKRG* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02097 691 SUPERFAMILY L domain-like 27 233 - -
Rops1g02097 691 SMART LRR_typ_2 187 210 IPR003591 -
Rops1g02097 691 SMART LRR_typ_2 91 115 IPR003591 -
Rops1g02097 691 SMART LRR_typ_2 139 163 IPR003591 -
Rops1g02097 691 SMART LRR_typ_2 211 234 IPR003591 -
Rops1g02097 691 Gene3D Ribonuclease Inhibitor 175 244 IPR032675 -
Rops1g02097 691 SUPERFAMILY Protein kinase-like (PK-like) 387 680 IPR011009 -
Rops1g02097 691 FunFam Protein NSP-INTERACTING KINASE 2 380 487 - -
Rops1g02097 691 Gene3D Transferase(Phosphotransferase) domain 1 489 681 - -
Rops1g02097 691 FunFam Protein NSP-INTERACTING KINASE 2 488 678 - -
Rops1g02097 691 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 290 675 - -
Rops1g02097 691 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Rops1g02097 691 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Rops1g02097 691 ProSiteProfiles Protein kinase domain profile. 409 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02097 691 Pfam Protein tyrosine and serine/threonine kinase 413 674 IPR001245 GO:0004672|GO:0006468
Rops1g02097 691 FunFam Protein NSP-INTERACTING KINASE 2 24 173 - -
Rops1g02097 691 Pfam Leucine Rich Repeat 213 235 IPR001611 GO:0005515
Rops1g02097 691 Gene3D Phosphorylase Kinase; domain 1 380 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02097 Rops-Chr1 42028553 42031700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02097 6 522 Miscellaneous Gene Families AT4G22730 59.168 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Rops1g02097 PK_Tyr_Ser-Thr 2.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02097 - - gmx:100777169 1123.61