Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02090 ATGGGGAGACAACCTTGCTGTGACAAACTTGGTGTGAAGAAAGGTCCATGGACTGGTGAGGAAGATAAGAAGCTCATCAACTTCATTCTCACAAATGGCCAGTGTTGTTGGCGAGCTGTGCCTAAGCTTGCTGGGCTTAGGCGTTGTGGCAAGAGTTGCCGTCTTCGTTGGACTAATTATCTTCGCCCTGACTTGAAGAGAGGTCTCCTCACCGAAGCTGAAGAGCAGCTAGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCAGGGAGAACAGATAATGAGATTAAAAATCATTGGAACACCCACATCAAGAAAAAGCTCCTCAAGATGGGGATTGATCCTGTTACTCATGAACCTATTAATAAACAAGTCTCATCCCAGGATAGTTCATCCACTGCAGAACATTTGCCACAAGCTGGTAATGGTAATAACCATCGGGTTAAGGAAAAGGATGGGATTCTCAACTCAGAAGAGAACTCAAGCTCATCACCAACTGAAAATTCTTCGGGGGAAGATTCCCTTTTGTTGGATAGTATTTGCAGTGATGAATCTCTAATGAATAGTTTGTGGATGGATGAAACTCCAATAATAGATGCATTATGGGACAGTACACCTAAAGCAGATAATACAAATAATGACATAAGCTTGCCATCTTGGGAGGAAAACTGTGCTTGGTTGTTGGATTGCCAGGACTTTGGTATTCATGATTTTGGTTTTAATTGTTTCAGTGAGATTGAGTCTAATGCACCACAAACTATAGGAATGGAGGAAAAACAGCATTAG 810 0.4284 MGRQPCCDKLGVKKGPWTGEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPINKQVSSQDSSSTAEHLPQAGNGNNHRVKEKDGILNSEENSSSSPTENSSGEDSLLLDSICSDESLMNSLWMDETPIIDALWDSTPKADNTNNDISLPSWEENCAWLLDCQDFGIHDFGFNCFSEIESNAPQTIGMEEKQH* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02090 269 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops1g02090 269 MobiDBLite consensus disorder prediction 131 148 - -
Rops1g02090 269 Gene3D - 12 67 - -
Rops1g02090 269 CDD SANT 16 61 IPR001005 -
Rops1g02090 269 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops1g02090 269 PANTHER F14D16.11-RELATED 1 174 - -
Rops1g02090 269 SMART sant 66 114 IPR001005 -
Rops1g02090 269 SMART sant 13 63 IPR001005 -
Rops1g02090 269 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops1g02090 269 FunFam MYB transcription factor 11 67 - -
Rops1g02090 269 MobiDBLite consensus disorder prediction 165 182 - -
Rops1g02090 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops1g02090 269 FunFam MYB transcription factor 70 146 - -
Rops1g02090 269 CDD SANT 71 112 IPR001005 -
Rops1g02090 269 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops1g02090 269 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Rops1g02090 269 Gene3D - 71 147 - -
Rops1g02090 269 MobiDBLite consensus disorder prediction 163 182 - -
Rops1g02090 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops1g02090 269 MobiDBLite consensus disorder prediction 131 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02090 Rops-Chr1 41975402 41977087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02090 1 261 MYB Transcription Factor Family AT4G12350 58.156 1.35e-103 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g02090 Myb_DNA-binding 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02090 K09422 - gmx:100800360 471.855