Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02085 ATGGCCCATATAGCACAATACACCAACATAGTAAAGTCTGAATCCTTCTTAGACATGGCAGCTAGAATGGGACTTTCGTTACTGGTCCTCACGAACCTTGTCATTTACATGACTGGCACTGCAGAATCCGCACGATCCAACCCTAACCCATCGGACTTCATCAAGTCCTCATGCAGGGCCACTCGGTACCCTGTTTTATGCGTTCAATGTCTGTTGGGGTATGCAAGCGTGATTCGCCATAGTGAGAGACAACTAGCCATGACTGCTTTATCGGTGACCATATCCAGGACTCGATCAAGTGCATCATTCGTGAAGAAGATATCCAAAGCAAGGGGCATCAAGCCTAGGGAATACAGAGCCATACAAGACTGCATAGAGAACATAAGTGATAGTATTGACCGTCTTAGGCAGTCGGTAAGAGAGCTAGGCCGTACGGGTGAGGCCACAGGGGGTGAGGACTTCATATGGCACATGAGCAATGTGCTGACTTGGGTTAGTGCTGCCCTCACTGATGACAACACATGTCTTGATGGTTTTGCTGGTTCTGCCATGAATGGAAACGTTAAGGCTGCTATCAGAGACAGGGTAGTTAATGTTGTTCAGGTCACTAGTAATGCACTGGCTTTGGTTAATCGCTTTGCCTCTAGTCACCAAACTGCCCCACATACAGAAACTCCTTAA 681 0.4743 MAHIAQYTNIVKSESFLDMAARMGLSLLVLTNLVIYMTGTAESARSNPNPSDFIKSSCRATRYPVLCVQCLLGYASVIRHSERQLAMTALSVTISRTRSSASFVKKISKARGIKPREYRAIQDCIENISDSIDRLRQSVRELGRTGEATGGEDFIWHMSNVLTWVSAALTDDNTCLDGFAGSAMNGNVKAAIRDRVVNVVQVTSNALALVNRFASSHQTAPHTETP* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02085 226 CDD PMEI-like_3 56 215 - -
Rops1g02085 226 PANTHER PECTINESTERASE INHIBITOR-LIKE 28 209 - -
Rops1g02085 226 FunFam Pectin methylesterase inhibitor 1 49 213 - -
Rops1g02085 226 Coils Coil 125 145 - -
Rops1g02085 226 Pfam Plant invertase/pectin methylesterase inhibitor 52 209 IPR006501 GO:0004857
Rops1g02085 226 SMART PMEI_2 49 209 IPR006501 GO:0004857
Rops1g02085 226 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 213 IPR035513 -
Rops1g02085 226 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 213 IPR035513 -
Rops1g02085 226 NCBIfam pectinesterase inhibitor domain 25 211 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02085 Rops-Chr1 41900105 41901044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02085 48 210 Carbohydrate Esterase AT3G14310 31.098 2.36e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02085 - - mtr:11427094 296.975