Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02084 ATGGCCGACGAAGCCAAAGCCAAAGGCAACGCAGCATTCTCCTCCGGCGACTACGCCGCCGCCATCCGTCACTTCTCAGATGCCATCGCTTTATCCCCCACCAACCACGTCCTCTATTCTAACCGATCCGCCGCTTACGCTTCCCTCCAAAAATACACCGACGCCTTAACCGACGCCAAGAAAACCGTCGAACTCAAACCCGACTGGTCCAAAGGTTATAGCCGTCTCGGCGCCGCACATCTCGGGCTCGCCCAATACGACGACGCCGTTTCAGCATACAAAAAGGGACTCGAAATTGACCCTAATAATGAACCCCTCAAATCCGGTTTAGCCGATGCCCAGGACCAGGCCCAGGCCGCAGCTTCCAGGTCACGCTCGGCGAGTCCATTCGGCGACGCATTCTCCGGCCCAGAGATGTGGGCCAAGCTCACCGCTGACCCCAGCACTAGGGCTTACCTTCAACAACCCGATTTTGTTCAGATGATGCAGGAGATTCAGAGAGATCCCAACAAACTGAACTTGCACTTGAAGGATCAAAGAGTCATGCAAGCCCTTGGGGTTTTGCTTAACGTGAAGTTTCGAACCCCGAATGATGACGCTGAAATGCCGGATTCTCCTTCGCCTTCACCGTCGGAGAGGAAGAGAGCTGCTGAAGCTGAGCCTGCGAAGCAACGTGAGCCCGAGCCTGAACCAGAGCCCGAACCTATGGAGTTGCCTGAGGAGGAGAAGGAAGCCAAGCAGAGGAAGGCTGAGGCTCAGAAGGAAAAGGAGGCTGGGAATGCAGCATACAAGAAGAAGGATTTTGAAGCTGCGATTCAACATTACTCAAAGGCTATGGAACTGGATGACGAGGATATATCTTATCTCACGAATCGTGCTGCTGTTTACTTGGAAATGGGAAAGTATGAGGAATGCATAAAAGATTGTGATAAGGCCGTTGAAAGAGGAAGAGAACTAAGATCAGACTTCAAGATGATAGCAAGAGCTTTGACAAGGAAAGGGACTGCCTTGGTCAAAATGGCAAACTGCTCGAAAGATTATGAACTGGTCATTGAGGCTTTCCAAAAAGCACTTACAGAGCATCGCAACCCGGAGACCTTGAAGAAACTTAATGAAGCTGAAAAGGCTAAAAAAGAACTAGAACAAGAAGAATACTTTGATCCAAAGTTGGCTGATGAGGAGAGAGAGAAAGGAAACGAATTCTTTAAGCAGCAGAAGTATCCTGAGGCTGTGAAGCATTACACAGAGGCTATAAGAAGAAATCCGAAAGATCCTAGGGTTTATAGTAACAGAGCTGCATGTTACACTAAACTGGGAGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGCATCGAGCTTGATCCAACCTTCTCAAAGGGTTATACCAGGAAAGGTGCAGTGCAGTTTTTCATGAAAGAATATGACAAGGCTTTGGAGACCTATAAGGAGGGGTTGAAACATGACCCTAACAACCAGGAGTTGCTTGATGGCATTGGAAGATGTGTACAACAAAATAATAAGGCAAACCGTGGAGATTTAACTCCTGAAGAATATAAGGAGAGACAGGCTAAGGCGATGCAGGACCCAGAGATACAGAGCATCCTCCAAGATCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCTAAGGTTGCACAGGAACATACGAAGAATCCAATGGTGATGAACAAGATCCAAAAGCTGATCAGTGCTGGAATTGTCCAGATGAGGTAA 1743 0.4814 MADEAKAKGNAAFSSGDYAAAIRHFSDAIALSPTNHVLYSNRSAAYASLQKYTDALTDAKKTVELKPDWSKGYSRLGAAHLGLAQYDDAVSAYKKGLEIDPNNEPLKSGLADAQDQAQAAASRSRSASPFGDAFSGPEMWAKLTADPSTRAYLQQPDFVQMMQEIQRDPNKLNLHLKDQRVMQALGVLLNVKFRTPNDDAEMPDSPSPSPSERKRAAEAEPAKQREPEPEPEPEPMELPEEEKEAKQRKAEAQKEKEAGNAAYKKKDFEAAIQHYSKAMELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMANCSKDYELVIEAFQKALTEHRNPETLKKLNEAEKAKKELEQEEYFDPKLADEEREKGNEFFKQQKYPEAVKHYTEAIRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFFMKEYDKALETYKEGLKHDPNNQELLDGIGRCVQQNNKANRGDLTPEEYKERQAKAMQDPEIQSILQDPVMRQVLVDFQENPKVAQEHTKNPMVMNKIQKLISAGIVQMR* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02084 580 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Rops1g02084 580 MobiDBLite consensus disorder prediction 239 261 - -
Rops1g02084 580 Pfam STI1 domain 521 572 IPR041243 -
Rops1g02084 580 Pfam STI1 domain 137 190 IPR041243 -
Rops1g02084 580 Gene3D Tetratricopeptide repeat domain 389 504 IPR011990 GO:0005515
Rops1g02084 580 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Rops1g02084 580 ProSiteProfiles TPR repeat profile. 391 424 IPR019734 GO:0005515
Rops1g02084 580 SMART CBM 529 568 IPR006636 -
Rops1g02084 580 SMART CBM 136 175 IPR006636 -
Rops1g02084 580 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Rops1g02084 580 Gene3D Tetratricopeptide repeat domain 249 385 IPR011990 GO:0005515
Rops1g02084 580 ProSiteProfiles TPR repeat profile. 252 285 IPR019734 GO:0005515
Rops1g02084 580 FunFam hsp70-Hsp90 organizing protein 3-like 390 504 - -
Rops1g02084 580 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Rops1g02084 580 Coils Coil 238 262 - -
Rops1g02084 580 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Rops1g02084 580 PANTHER TPR REPEAT CONTAINING PROTEIN 2 552 - -
Rops1g02084 580 SUPERFAMILY TPR-like 390 503 IPR011990 GO:0005515
Rops1g02084 580 FunFam Putative stress-induced-phosphoprotein 1 126 194 - -
Rops1g02084 580 FunFam Stress-induced phosphoprotein 1 1 116 - -
Rops1g02084 580 SMART tpr_5 459 492 IPR019734 GO:0005515
Rops1g02084 580 SMART tpr_5 36 69 IPR019734 GO:0005515
Rops1g02084 580 SMART tpr_5 70 103 IPR019734 GO:0005515
Rops1g02084 580 SMART tpr_5 2 35 IPR019734 GO:0005515
Rops1g02084 580 SMART tpr_5 425 458 IPR019734 GO:0005515
Rops1g02084 580 SMART tpr_5 327 364 IPR019734 GO:0005515
Rops1g02084 580 SMART tpr_5 252 285 IPR019734 GO:0005515
Rops1g02084 580 SMART tpr_5 391 424 IPR019734 GO:0005515
Rops1g02084 580 SMART tpr_5 286 319 IPR019734 GO:0005515
Rops1g02084 580 ProSiteProfiles TPR repeat profile. 459 492 IPR019734 GO:0005515
Rops1g02084 580 Coils Coil 363 383 - -
Rops1g02084 580 FunFam Stress-induced phosphoprotein 1 249 383 - -
Rops1g02084 580 MobiDBLite consensus disorder prediction 195 261 - -
Rops1g02084 580 Pfam Tetratricopeptide repeat 460 492 IPR001440 GO:0005515
Rops1g02084 580 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Rops1g02084 580 Gene3D - 127 193 - -
Rops1g02084 580 ProSiteProfiles TPR repeat profile. 425 458 IPR019734 GO:0005515
Rops1g02084 580 Gene3D - 511 580 - -
Rops1g02084 580 Pfam TPR repeat 398 439 - -
Rops1g02084 580 Pfam TPR repeat 259 300 - -
Rops1g02084 580 MobiDBLite consensus disorder prediction 211 232 - -
Rops1g02084 580 SUPERFAMILY TPR-like 251 379 IPR011990 GO:0005515
Rops1g02084 580 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 512 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02084 Rops-Chr1 41884313 41888012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02084 390 502 U-box Gene Family AT3G07370 27.434 3.30e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02084 K09553 - gmx:100816776 912.138