Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02082 ATGGAAGGTTTGAGGGTCTTGCCATGTTATCATGGTGGGGCCAAGATGACACTTGGATCACGTGTGAGACGTTTGCTTCACTTCTTCACTAGTCACAAACATACCACAGTAACCCTCGGGATTTCATCTGACCCCTCTCTTTTTGTAGACAACAACTCTTTAGACAGTGCAAACAAGGAGTGCTGTTTCTTTTTGCTCTTTTCGGTTGGATTTGACAATATCCTTATAAAGATTGTTGATGAAAGGCAGCTTACAAAAGATTTTCTTCTACCATATATATCTCGTGAATTTGTGCTACAAAGGAGGTTTGAGTCTGGAGCGGATATGAACACTTTTTCCCATGTTCCTCCTGGCTTTCGTTTCCATCCCACTGATGAAGAACTTGTTGATTACTACCTTAGGAAAAAGATAGCTTCTAAAAAGATTGATCTAGATGTCATAAAGGATGTCGATCTCTATAAAATTGAGCCATGGGATCTTCAAGAGTTATGCAAATTGGGAACGGATGATCAAAATGACTGGTATTTCTTTAGTCATAAAGATAAGAAGTACCCAACTGGCACTCGTACCAATAGAGCTACTAAGGCAGGATTCTGGAAAGCTACAGGAAGGGACAAGGCAATTTACTCAAGGAATTGCCTGATTGGCATGAGAAAGACTCTTGTGTTTTACCAAGGAAGAGCCCCAAATGGACAGAAATCTGACTGGATCATGCATGAATACCGGTTAGAAACTAATGAAAGTGGAACTCCTCAGGAAGAGGGGTGGGCTGTATGTAGAGTGTTCAAGAAAAGAACGACAACAATGCGGAAAGTGGGGGAGTATGAGTCACCATGCTGGTATGATGACCAGGTCTCGTTCATGCAAGAGCTTGAATCCCCAAGGCCAGTTTCTCACCCTTATGCATCATACCACCAACACTATCCCTGCAAGCAGGAGTTGGAATTGCAATACAATATAACCCACGATGCTTTCCTCCAACTTCCACAACTAGAAAGCCCCAAAATTCCTCAATCTGCAGCCAGTTTGAGTTCTTGCAGCCCAGTTATCCCTTATGGCTATGATAACAATAACAATGGAAGTGCACTCACCCAAGAAGAAAACTTTAAACAGTGCCAGCAACAAAGTCTACAATTGTTTTATGGTAGCAATGCTCAAGCTGTGGATCAAGTGACTGATTGGCGAGTACTCGACAAATTTGTTGCTTATCAGCTCAGTCATGATCAAGATGTTTCCAAGGAAACCAGTTATTCCAATGTGGCTGATCAAATTACTTTGCTAGCAAATGGATCCAAAAAACAGGAAATTGGTCACGAATATGCTTCAACGTCCACCTCCAGTTGCCAGATTGACCCATGGAAGTGA 1365 0.4205 MEGLRVLPCYHGGAKMTLGSRVRRLLHFFTSHKHTTVTLGISSDPSLFVDNNSLDSANKECCFFLLFSVGFDNILIKIVDERQLTKDFLLPYISREFVLQRRFESGADMNTFSHVPPGFRFHPTDEELVDYYLRKKIASKKIDLDVIKDVDLYKIEPWDLQELCKLGTDDQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSRNCLIGMRKTLVFYQGRAPNGQKSDWIMHEYRLETNESGTPQEEGWAVCRVFKKRTTTMRKVGEYESPCWYDDQVSFMQELESPRPVSHPYASYHQHYPCKQELELQYNITHDAFLQLPQLESPKIPQSAASLSSCSPVIPYGYDNNNNGSALTQEENFKQCQQQSLQLFYGSNAQAVDQVTDWRVLDKFVAYQLSHDQDVSKETSYSNVADQITLLANGSKKQEIGHEYASTSTSSCQIDPWK* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02082 454 Gene3D NAC domain 124 268 IPR036093 GO:0003677|GO:0006355
Rops1g02082 454 FunFam NAC domain-containing protein 124 268 - -
Rops1g02082 454 SUPERFAMILY NAC domain 111 264 IPR036093 GO:0003677|GO:0006355
Rops1g02082 454 ProSiteProfiles NAC domain profile. 115 264 IPR003441 GO:0003677|GO:0006355
Rops1g02082 454 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 114 363 - -
Rops1g02082 454 Pfam No apical meristem (NAM) protein 116 243 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02082 Rops-Chr1 41841369 41850991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02082 109 454 NAC Transcription Factor Family AT1G12260 54.737 1.84e-135 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops1g02082 NAM 2.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02082 - - pvy:116105603 584.334