Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02078 ATGGACTTGAAGTCCTCTCATCTTTCTCCTGTTCTTACTGATCCCATACCCGTAAACAAGTCAAGACTAGGAATCCACTCTACTCTACCAACTTATTCCCAGCCAGATTCACCTCTCTCCCCCGGGAAGTATTCAAGAACTGGTTCAAGGAAAAGTGCAGGGAGTCTTGATGATGTTCGGTCCAATGGTTGGTTGGATGCCATGAAGGCCTCTTCACCTCCAAGAAAGAAGCTATTTAAAGGTTCAAATGCTCAGGTTGCTTCTATTGACTGTGACATTGAAGAAGACTATCACTCATTGATGCTTGATTATCCTTCAGCAATAGACTCGTTTGAGAAAATTATTGACCGTGCAAAGAATAAGAAGGTTGCAGTGTTTCTGGATTATGATGGCACTCTTTCACCTATAGTAGATGACCCTGACTGTGCCTTTATGTCTGAAGCTATGCGTAATACTGTGAGAAATGTGGCAAGGTATTTTCCCACGGCAATTATCAGTGGAAGAAGCCGTGAAAAGGTTTATGATCTAGTTAAACTAACAGAACTCTACTATGCTGGTAGTCATGGAATGGACATTATTGGCCCTTTTCGTCAGACTCAGTCCAATAACCATCCAAATTGTGTCAACTCTACTGACCATCAGGTTTTTAGAACCCTCGTCGAGATTACTCAGGATATAAAGGGTGCAAAAGTTGAAAATCACAAGTTTTGCGTTTCTGTACATTACCGTAACGTAGAAGAGAATAATTGGACAACAATTGGACAACGTGTCCATGATATGTTGAAAAATTACCCTCGTTTACGTTCCACCCATGGACGGAAGGTTTTAGAGGTCCTTCCTGTGATTGAATGGAACAAAGGTAAAGCTGTTGAATTTTTACTTGAATCTCTAGGGTTAAATGATTGGCATGATGTGCTTCCCATCTATATTGGAGATGATAAAACCGATGAAGATGCTTTCAAGGTGCTGCGTGAGAGAAATCGAGGTTGTGGGATTTTGGTTTCATCAGTGAAGAAAGAAAGCAGCGCCTTCTACTCTATCCGAGACCCGAATGAGGTTATGAAATTTCTCCAACTTTTGGTGAATTGGAAGAGGCAAGAACGAAGGGAGCATGAGGAGAAGTAA 1125 0.4151 MDLKSSHLSPVLTDPIPVNKSRLGIHSTLPTYSQPDSPLSPGKYSRTGSRKSAGSLDDVRSNGWLDAMKASSPPRKKLFKGSNAQVASIDCDIEEDYHSLMLDYPSAIDSFEKIIDRAKNKKVAVFLDYDGTLSPIVDDPDCAFMSEAMRNTVRNVARYFPTAIISGRSREKVYDLVKLTELYYAGSHGMDIIGPFRQTQSNNHPNCVNSTDHQVFRTLVEITQDIKGAKVENHKFCVSVHYRNVEENNWTTIGQRVHDMLKNYPRLRSTHGRKVLEVLPVIEWNKGKAVEFLLESLGLNDWHDVLPIYIGDDKTDEDAFKVLRERNRGCGILVSSVKKESSAFYSIRDPNEVMKFLQLLVNWKRQERREHEEK* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02078 374 FunFam Trehalose 6-phosphate phosphatase 123 211 - -
Rops1g02078 374 Pfam Trehalose-phosphatase 126 350 IPR003337 GO:0003824|GO:0005992
Rops1g02078 374 FunFam Trehalose 6-phosphate phosphatase 209 281 - -
Rops1g02078 374 MobiDBLite consensus disorder prediction 26 57 - -
Rops1g02078 374 NCBIfam trehalose-phosphatase 121 361 IPR003337 GO:0003824|GO:0005992
Rops1g02078 374 NCBIfam HAD-IIB family hydrolase 125 325 IPR006379 -
Rops1g02078 374 FunFam Trehalose 6-phosphate phosphatase 212 370 - -
Rops1g02078 374 Gene3D - 123 207 IPR023214 -
Rops1g02078 374 Gene3D - 208 374 IPR023214 -
Rops1g02078 374 SUPERFAMILY HAD-like 124 365 IPR036412 -
Rops1g02078 374 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 43 371 IPR044651 GO:0004805|GO:0005992
Rops1g02078 374 MobiDBLite consensus disorder prediction 26 56 - -
Rops1g02078 374 CDD HAD_TPP 124 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02078 Rops-Chr1 41779569 41781900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02078 119 360 Trehalose Biosynthesis Gene Families AT1G70290 27.239 4.89e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02078 K01087 - tcc:18606311 517.309