Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02053 ATGGATGAACAGAACGAAGCACCAGACAATAGAGAACTCTACGCTCTTCTGAACTTGTCTCCAGAAGCTTCCGATGAAGAAATCCGGAGAGCTTATCGTCAATGGGCACAAGTCTATCACCCTGATAAGTACCAAGCTCCTCACATGAAAGATATTGCCACGGAGAACTTTCAGCGAGTGTGTGAAGCGTATGAGATATTGTCAGATCCAAATAAGAGGCAAATATATGATATCTATGGGATGGAAGGGTTGAAGTCTGGTTTGGAACTTGGTCCAATGCTGCATAAAGCTGAAGAGATCAAGGCGGAGTTGGAGAGACTGAAGAAGATGGAGAAACTTGAAAAGATAGCGGCGCATTTTCGATCCTCTGGTACAATTCTCGCCAATATGTCTTTGCCACACTTTCTATATGGTGATGGCCTCTTCAGAGGAATGGCTATGACAAGTGAAATTGAGTCTCAATTATCAAAGCGCAATGCTGTAACAGTTGGTGGCAATTTAGCAGTTGATGGAAATGAAGGTGGTGGAGCTGCTACTGCTTTGTTTAGGCATCAAATTTCAGAAGTTTCATCCATCGACTTTGTGGCTTCAGCTGGTTTATCTGCACTAATTGGGGTGCAAACATCTCGTAATCTTTCGGTACACTCAACTGCGACAATGGGCATAGCAATGTCTCTGAAAGATGGTTCATTGAATCTTTCAAATTCATGGACCCGCCAACTGTCAGAAACAGCGAGTGGACATATACAGCTTAATTTGGGACCGCAATCATATGTAGCTGTAGGGTGGAAAAAGAAAGATGAGAGAAGGTCTGCCTCTGGAGAAGTGAAGTTTGACACAGGTTCTTTTGAGACAGCAGTTCGTTATACTCATCGCTTTTCTTCTAAGTCTCTTGGCTGCATTGCAGGAAGAGTTGGGAGTTCTTCCCTTGAGATTGAAGTTGGTGGTGGGAGGAAGATATCCAAATTCAGCAGTGTGCGCTGGTTGTATATAATAGGAATTCAGGGCATTTTCTGGAAATTTGAACTCTATCGCGGGGGTCAGAAGTTGATTATTCCTGTTTTGCTGACGAGGCATTTAAACCCTGCATTTGCTACCGGAGCATTTGTTGTTCCAGCATCTCTTTATTTTGTTCTGAAGAAATTTTTTATTAAACCATATTACATTAGAAGGAATAAGCAGAAGGCTCTAGAGAAGGAAGAGAAAACTTCTGCTCAGGTTCAAGAAGCAAGGGCTACAGCAGAGAAAGCTCAGAAATTACAACAAAATGTGGCTAATAGGAAAAGAAACAGACAATTAGAAACAGGTGGACTGGTTATTATGAGAGCGCTCTATGGAAATCAAAAAATTTTGAGCAACTTAAATTCATCAAGTGAAACGAGTTTTGAGTCAACTTCTGAAGTCATTGATGTTACAACACCTCTGAATTTTCTAGTTAATGATTCTGGCCAACTTAAGCTTCATGAAGGTGTAAAAAAATCAGGAATCATGGGCTTTTATGATCCATGCCCAGGTGAGCGTAAACAGTTGTATGTAGAGTACGCTTATGCTGGCAATCAATACAAGGTTTGCGTTGGTGATTATGAAGAATTACTGATACCCCAGGGCACCCACAGGATATAA 1623 0.4153 MDEQNEAPDNRELYALLNLSPEASDEEIRRAYRQWAQVYHPDKYQAPHMKDIATENFQRVCEAYEILSDPNKRQIYDIYGMEGLKSGLELGPMLHKAEEIKAELERLKKMEKLEKIAAHFRSSGTILANMSLPHFLYGDGLFRGMAMTSEIESQLSKRNAVTVGGNLAVDGNEGGGAATALFRHQISEVSSIDFVASAGLSALIGVQTSRNLSVHSTATMGIAMSLKDGSLNLSNSWTRQLSETASGHIQLNLGPQSYVAVGWKKKDERRSASGEVKFDTGSFETAVRYTHRFSSKSLGCIAGRVGSSSLEIEVGGGRKISKFSSVRWLYIIGIQGIFWKFELYRGGQKLIIPVLLTRHLNPAFATGAFVVPASLYFVLKKFFIKPYYIRRNKQKALEKEEKTSAQVQEARATAEKAQKLQQNVANRKRNRQLETGGLVIMRALYGNQKILSNLNSSSETSFESTSEVIDVTTPLNFLVNDSGQLKLHEGVKKSGIMGFYDPCPGERKQLYVEYAYAGNQYKVCVGDYEELLIPQGTHRI* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02053 540 Gene3D DnaJ domain 1 91 IPR036869 -
Rops1g02053 540 PRINTS DnaJ domain signature 52 72 IPR001623 -
Rops1g02053 540 PRINTS DnaJ domain signature 14 32 IPR001623 -
Rops1g02053 540 PRINTS DnaJ domain signature 72 91 IPR001623 -
Rops1g02053 540 PRINTS DnaJ domain signature 32 47 IPR001623 -
Rops1g02053 540 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Rops1g02053 540 Pfam DnaJ domain 13 77 IPR001623 -
Rops1g02053 540 PANTHER CHAPERONE PROTEIN DNAJ 13 1 540 IPR042162 -
Rops1g02053 540 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
Rops1g02053 540 Coils Coil 94 114 - -
Rops1g02053 540 CDD DnaJ 12 69 IPR001623 -
Rops1g02053 540 Coils Coil 390 430 - -
Rops1g02053 540 SUPERFAMILY Chaperone J-domain 9 83 IPR036869 -
Rops1g02053 540 Pfam DnaJ-like protein C11, C-terminal 386 534 IPR024586 -
Rops1g02053 540 SMART dnaj_3 11 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02053 Rops-Chr1 41333746 41346002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02053 14 79 C2H2 Transcription Factor Family AT1G74250 44.118 4.86e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02053 K09531 - gmx:100817782 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02053 1 41333746 41346002 Rops1g02053 1 41333746 41346002 ECH