Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02051 ATGGCTACTCTCTTCGTCTCGCGGCAATGGCTTTTGGTTTTTACTTGCATGTTATTATATGCATCAACTGTGACATGCACACGCTACCACGACAGCACCTTCAACATATTGTCTTCCACCAAGAAGAACCATAGTTGGGTTGGACCCATTGGTCACCGTGTAATCACTGTTGACGTTAACGGTGGTGGCGAGTTCCGGTCCGTCCAAGACGCCGTCAATGCTGTCCCAGACAACAGTAGAAAGAACGTCCTTATTCAAATCAGCCCCGGTTACTACATAGAGAAGGTGGTGGTGCCCGTGACGAAGCCGTACATAACGTTTCAGGGCGCGGGTAAGGAAGTGACTGTGATAGAATGGCACGATCGAGCCAGTGACCCTGGTCCCAGTGGACAACAATTACGTACTTACAGAACAGCTTCTGTTACTGTTTTTGCCAGCTATTTTTCTGCTAGGAATATCAGTTTTAAGAACACAGCGCCAGCACCGATGCCTGGGATGCAAGGATGGCAAGCGGTGGCGTTTCGCATATCAGGTGACAAAGCATACTTCTCCGGCTGTGGGTTCTACGGTGCACAAGACACTCTTTGCGACGATGCTGGCAGGCATTACTTCAAGGAATGCTATATTGAGGGCTCCATTGATTTCATTTTTGGGAATGGCAGGTCCATGTACAAGGATTGCGAGCTACATTCAATAGCAACAAGGTTCGGATCCATAGCAGCCCATGATAGAAAGTACCCATATGAAAAGACAGGCTTTGCATTCGTACGATGCAGGGTGACAGGTACAGGCCCTCTATATGTGGGGCGAGCAATGGGTCAATACTCGAGAATTGTCTACGCTTACACATATTTTGATGATATAGTTGCACACGGCGGTTGGGATGATTGGGACCATGTCAGCAACAAGAACAAGACTGTGTTCTTCGGAGTGTACAAGTGTTGGGGACCAGGAGTAGAGGCAGTACGTGGGGTGTCATGGGCCCGTGAGTTAGATTTCGAATCCGCTCATCCATTTCTCGTTAAAAGCTTCGTCAATGGAAGACACTGGATCGCACCCTCTGATGCTTAG 1071 0.4855 MATLFVSRQWLLVFTCMLLYASTVTCTRYHDSTFNILSSTKKNHSWVGPIGHRVITVDVNGGGEFRSVQDAVNAVPDNSRKNVLIQISPGYYIEKVVVPVTKPYITFQGAGKEVTVIEWHDRASDPGPSGQQLRTYRTASVTVFASYFSARNISFKNTAPAPMPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRKYPYEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYAYTYFDDIVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGVEAVRGVSWARELDFESAHPFLVKSFVNGRHWIAPSDA* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02051 356 Gene3D - 51 355 IPR012334 -
Rops1g02051 356 ProSitePatterns Pectinesterase signature 2. 209 218 IPR033131 -
Rops1g02051 356 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 43 352 - -
Rops1g02051 356 FunFam Pectinesterase 50 353 - -
Rops1g02051 356 Pfam Pectinesterase 55 347 IPR000070 GO:0030599|GO:0042545
Rops1g02051 356 SUPERFAMILY Pectin lyase-like 52 353 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02051 Rops-Chr1 41279609 41283827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02051 1 356 Carbohydrate Esterase AT5G47500 73.204 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02051 - - cam:101501763 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02051 1 41279609 41283827 Rops1g02051 1 41279609 41283827 ECH
Rops1g02051 1 41279609 41283827 Rops2g04267 2 77803262 77808688 PCT