Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02049 ATGGAGAGGCACAAATGCAAGCTTTGCTCAAGAACATTCTCCAATGGCAGAGCACTGGGTGGCCACATGAAAGCTCACTTAGCCACGCTCCCTCTTCCTCCCAAACAACCCCAACCACCTTCTCACTCCACCTCCTTCTCATCATATGCCTCTTCTTCATCAGATGAAAAGGCTCAGATTTATGGGTTGAGAGAGAACCCAAAAAAAAGTTTCAGGCTTGCAGATCCTGGGTTTTCTTTCCCAGTTGATACTGGCTCTGTTGTTCAAGACAGAGAGAGTGAGACCGAGTCAAAGAACCCAACTCGTAGACGATCCAAGCGAACCAGAAAACCCCACAATTTGGAAACAGAGAAGAAGCCTAAACTGAGTTTCATGGAGTCACCAGAACCTGTCAGCTCAGTTTCTGATACTTCCCCCGAGGAAGATGTTGCCATGTGCCTCATGATGCTCTCGAGGGACAACAGATGGAAGAATGTTATAGAAGAAGAAGAAGTTCAAAGATCAGATGAAAAGTCAAAGGGAATCCAAGAGATCAAGTTCAAGAGAGTTCGCTGTAAGCACAAGTGTCAAAACTGTGGGAAAACGTTTCGATCTTCTCGAGCATTGGGAAGTCATAAAAGTATATGCTTTATTAATGAAGCAGAGGCTGCAAGTGCAGGTAATGATAAAATCTTCCAATGCCCATTTTGTTCTAAGGTATTTGGTTCTGGTCAAGCACTTGGTGGCCACAAGAGATCTCACCTTTACCCATCTTCATCCTCAAATGCCAATGATTCTACTAGATTGAAAAAGAGTTTCTTCGATCTCAACTTGCCTGCTCCAGCAGAAGAAGATGACCTTAGTGTCCTTTCTGATGCCTAA 861 0.4425 MERHKCKLCSRTFSNGRALGGHMKAHLATLPLPPKQPQPPSHSTSFSSYASSSSDEKAQIYGLRENPKKSFRLADPGFSFPVDTGSVVQDRESETESKNPTRRRSKRTRKPHNLETEKKPKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDNRWKNVIEEEEVQRSDEKSKGIQEIKFKRVRCKHKCQNCGKTFRSSRALGSHKSICFINEAEAASAGNDKIFQCPFCSKVFGSGQALGGHKRSHLYPSSSSNANDSTRLKKSFFDLNLPAPAEEDDLSVLSDA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02049 286 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Rops1g02049 286 MobiDBLite consensus disorder prediction 41 59 - -
Rops1g02049 286 MobiDBLite consensus disorder prediction 29 138 - -
Rops1g02049 286 Pfam C2H2-type zinc finger 187 206 - -
Rops1g02049 286 Pfam C2H2-type zinc finger 225 248 - -
Rops1g02049 286 Pfam C2H2-type zinc finger 3 28 - -
Rops1g02049 286 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Rops1g02049 286 MobiDBLite consensus disorder prediction 110 124 - -
Rops1g02049 286 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Rops1g02049 286 Gene3D Classic Zinc Finger 184 247 - -
Rops1g02049 286 SMART c2h2final6 187 207 IPR013087 -
Rops1g02049 286 SMART c2h2final6 225 247 IPR013087 -
Rops1g02049 286 SMART c2h2final6 4 26 IPR013087 -
Rops1g02049 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Rops1g02049 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 247 IPR013087 -
Rops1g02049 286 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 286 IPR044303 GO:0006355
Rops1g02049 286 SUPERFAMILY beta-beta-alpha zinc fingers 187 247 IPR036236 -
Rops1g02049 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 217 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02049 Rops-Chr1 41214531 41215542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02049 1 283 C2H2 Transcription Factor Family AT3G60580 36.422 1.65e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops1g02049 zf-C2H2_6 9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02049 - - gmx:100815124 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02049 1 41214531 41215542 Rops2g04275 2 77970434 77971808 PCT