Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02048 ATGACAATGGGGCACAAGATAAATGAAGGAGTGATGGAAAATGTAGCAACAATCGGAGGATTGATAGGAGTCCAATTTATCTACGCAGGGAACGCTGTGTTGATGAGTTATTCTATGTCATTGGGACTCAGTTCTTTTACCATTATCATTTTCACTTCTCTGGCTACTTTCGTTATTCTCTTCCCTGTTGCCTGTTGTTTTGAAAGGAGTAAGTGGCCCAAGAATTGCAGTTTAAAGTTGATTATGCAGCTATTGTTTCTTTCATTTGGAGGATTAGCCTTCCAGTTTTTATTCCTAAAAGGAATCGATCAAACTTCTCCAGCAATGGGAACTGCCATGCCAAACCTTGCCCCAGGTCTTATCTTCATCATCGCATGGATTTTTGGGTTAGAGAAAGTCAACTTAAGAAACAAGCACAGTAAAGTAAAAATCTTAGGAACATTGCTTTGTGTCTGTGGTGCTCTCACAATGAGCATGATGCAAAGCATTTCTGCTCCTGCAACTGGGAAAGAGGATACAGTTCAATCATCATCAACACAATCAGCTTTTGTCTTTGACATGCAGAAGATAATCGGTTGCCTCTATCTCATAGCTTCCGTCTTAATAATGTCAAGCAACATTGTCCTGCAGGCTTTTGCTCTTGGAGATTTTCCTGCACCTATGTCCTTAAGTGCAATAACGTCCTTGTTTGGGGCATTCATGACAGGAATCGTTCAATTGCTTGACAATCACGAAATGAAAACTAATTGGCAACTTGTGACTTTTGGAAACCTGATTGGTTATTCTATTCTGATAGGTGCAGTGAGTGGAATATGCCTAAGCTTCAATGGGTGGGCACTTAATAAGAGAGGGCCAGTCTTTGTCTCCATGTTTAGCCCCATTGGAACAGTCTGCTCTGTTATTTTCTCTGTCGTTACCCTAGGAGACACTATTAATATTGGAAGCCTTGCAGGGATGTTCCTCATGTTCACTGGGCTCTACTTAGTTCTTTGGGCCAAAGGGAAAGAAGGTTACACAGATGGAGATGTCTCAGAGAAAGCTTGA 1044 0.4128 MTMGHKINEGVMENVATIGGLIGVQFIYAGNAVLMSYSMSLGLSSFTIIIFTSLATFVILFPVACCFERSKWPKNCSLKLIMQLLFLSFGGLAFQFLFLKGIDQTSPAMGTAMPNLAPGLIFIIAWIFGLEKVNLRNKHSKVKILGTLLCVCGALTMSMMQSISAPATGKEDTVQSSSTQSAFVFDMQKIIGCLYLIASVLIMSSNIVLQAFALGDFPAPMSLSAITSLFGAFMTGIVQLLDNHEMKTNWQLVTFGNLIGYSILIGAVSGICLSFNGWALNKRGPVFVSMFSPIGTVCSVIFSVVTLGDTINIGSLAGMFLMFTGLYLVLWAKGKEGYTDGDVSEKA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02048 347 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 335 - -
Rops1g02048 347 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 159 - -
Rops1g02048 347 Pfam EamA-like transporter family 191 330 IPR000620 GO:0016020
Rops1g02048 347 Pfam EamA-like transporter family 22 158 IPR000620 GO:0016020
Rops1g02048 347 PANTHER WAT1-RELATED PROTEIN 20 337 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02048 Rops-Chr1 41190065 41194037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02048 3 346 Nodulin-like Gene Family AT5G47470 57.514 9.27e-140 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02048 - - aprc:113870214 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02048 1 41190065 41194037 Rops2g04277 2 77988195 77993942 PCT