Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02042 ATGGTGAAGATAGCTGTTGGTACCTTTGATGACTCTTTTAGTGTTGCCTCTCTCAAGGCTTATCTATCTGAGTTCATTGCCACTCTGCTTTTCGTTTTCGCTGGTGTTGGATCAGCCATTGCTTACAATGAGCTTACAAAAGACGCAGCCTTGGATGCGCCGGGACTGGTGGCAATAGCCATAGCCCATGCATTTGCACTATTCGTAGGAGTGTCCGTTGCAGCCAACATCTCAGGTGGGCATTTGAACCCAGCTGTCACATTTGGATTGGCCATTGGAGGCAACATCACCCTCATTACTGGTTTCTTGTACTGGATTGCCCAATTGCTTGGTTCCATCGTTGCATGTCTCCTCCTCAATTTGGTCACCGCTAAGAGCATTCCAACCCACGGATTGGCTTCTGGGGTGAACGCTTTTCAAGGTGTAGTGTTCGAGATTATTGTGACTTATGCATTGGTTTACACTGTTTATGCCACTGCAGCTGACCCCAAAAAGGGCTCATTGGGCACTATTGCACCTATTGCTATTGGGTTCATTGTGGGTGCAAACATCTTAGCTGCTGGTCCATTCAGTGGTGGTTCAATGAACCCGGCTCGTTCATTTGGCCCAGCCGTGGTTAGTGGAAACTTCGATTACATTTGGATCTACTGGGTTGGCCCATTGATTGGAGGAGGCTTGGCTGGGTTGGTTTATGGTGACATCTTCATTGGTTCATATGCACCTGCCCCGGCCACTGAAACCTACCCTTAA 750 0.4827 MVKIAVGTFDDSFSVASLKAYLSEFIATLLFVFAGVGSAIAYNELTKDAALDAPGLVAIAIAHAFALFVGVSVAANISGGHLNPAVTFGLAIGGNITLITGFLYWIAQLLGSIVACLLLNLVTAKSIPTHGLASGVNAFQGVVFEIIVTYALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFDYIWIYWVGPLIGGGLAGLVYGDIFIGSYAPAPATETYP* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02042 249 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Rops1g02042 249 NCBIfam MIP family channel protein 23 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02042 249 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02042 249 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02042 249 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02042 249 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02042 249 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02042 249 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02042 249 Pfam Major intrinsic protein 14 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02042 249 FunFam Probable aquaporin TIP1-1 2 247 - -
Rops1g02042 249 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops1g02042 249 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Rops1g02042 249 SUPERFAMILY Aquaporin-like 15 236 IPR023271 -
Rops1g02042 249 PANTHER AQUAPORIN-8 4 237 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02042 Rops-Chr1 41101115 41103438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02042 1 246 Major Intrinsic Protein MIP AT5G47450 81.377 4.31e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02042 K09873 - gmx:100527333 426.787