Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02029 ATGGGTGCCTACAAGTATTCTTCAGAGCTATGGCGTAAGAAGCAGTCTGATGTTATGCGCTTCTTGCAGCGTGTGAGGTGTTGGGAGTATCGTCAGCAGCCTTCCATTGTTCGTGTGACAAGGCCGACTCGTCCTGACAAGGCTCGTCGCTTGGGCTACAAGGCTAAGCAGGGTTATGTGGTTTACCGTGTCCGTGTTCGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTGTATGGGAAGCCCACAAATCAGGGTGTTACTCAACTGAAATTTCAGCGGAGCAAGAGGTCAGTTGCTGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTCAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTATGAGATAATTCTGGTGGATGTTGCTCACTCTGCTATTAGAAATGATCCAAGAATCAATTGGCTCTGCAATCCAGTGCACAAGCACAGGGAGCTGCGTGGGCTCACCTCTGCTGGGAAAAAGTGGTCTGTTTCAGCTTCTAGATGA 534 0.5 MGAYKYSSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYYEIILVDVAHSAIRNDPRINWLCNPVHKHRELRGLTSAGKKWSVSASR* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02029 177 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Rops1g02029 177 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 171 IPR012678 GO:0003735|GO:0005840|GO:0006412
Rops1g02029 177 SMART Ribosomal_L15e_2 2 177 IPR000439 GO:0003735|GO:0005840|GO:0006412
Rops1g02029 177 FunFam Ribosomal protein L15 1 175 - -
Rops1g02029 177 Pfam Ribosomal L15 2 170 IPR000439 GO:0003735|GO:0005840|GO:0006412
Rops1g02029 177 PANTHER RIBOSOMAL PROTEIN L15 1 170 IPR000439 GO:0003735|GO:0005840|GO:0006412
Rops1g02029 177 Gene3D Ribosomal protein l15e 1 174 IPR024794 GO:0003735|GO:0005840
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02029 Rops-Chr1 40930221 40933285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02029 1 170 Cytoplasmic Ribosomal Protein Gene Family AT4G17390 93.529 6.29e-106 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02029 K02877 - zju:107415665 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02029 1 40930221 40933285 Rops2g04285 2 78091293 78093208 PCT