Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops1g02029 | ATGGGTGCCTACAAGTATTCTTCAGAGCTATGGCGTAAGAAGCAGTCTGATGTTATGCGCTTCTTGCAGCGTGTGAGGTGTTGGGAGTATCGTCAGCAGCCTTCCATTGTTCGTGTGACAAGGCCGACTCGTCCTGACAAGGCTCGTCGCTTGGGCTACAAGGCTAAGCAGGGTTATGTGGTTTACCGTGTCCGTGTTCGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTGTATGGGAAGCCCACAAATCAGGGTGTTACTCAACTGAAATTTCAGCGGAGCAAGAGGTCAGTTGCTGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTCAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTATGAGATAATTCTGGTGGATGTTGCTCACTCTGCTATTAGAAATGATCCAAGAATCAATTGGCTCTGCAATCCAGTGCACAAGCACAGGGAGCTGCGTGGGCTCACCTCTGCTGGGAAAAAGTGGTCTGTTTCAGCTTCTAGATGA | 534 | 0.5 | MGAYKYSSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYYEIILVDVAHSAIRNDPRINWLCNPVHKHRELRGLTSAGKKWSVSASR* | 178 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops1g02029 | 177 | ProSitePatterns | Ribosomal protein L15e signature. | 46 | 69 | IPR020925 | GO:0003735|GO:0005840|GO:0006412 | |
Rops1g02029 | 177 | SUPERFAMILY | Ribosomal proteins S24e, L23 and L15e | 1 | 171 | IPR012678 | GO:0003735|GO:0005840|GO:0006412 | |
Rops1g02029 | 177 | SMART | Ribosomal_L15e_2 | 2 | 177 | IPR000439 | GO:0003735|GO:0005840|GO:0006412 | |
Rops1g02029 | 177 | FunFam | Ribosomal protein L15 | 1 | 175 | - | - | |
Rops1g02029 | 177 | Pfam | Ribosomal L15 | 2 | 170 | IPR000439 | GO:0003735|GO:0005840|GO:0006412 | |
Rops1g02029 | 177 | PANTHER | RIBOSOMAL PROTEIN L15 | 1 | 170 | IPR000439 | GO:0003735|GO:0005840|GO:0006412 | |
Rops1g02029 | 177 | Gene3D | Ribosomal protein l15e | 1 | 174 | IPR024794 | GO:0003735|GO:0005840 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops1g02029 | Rops-Chr1 | 40930221 | 40933285 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops1g02029 | 1 | 170 | Cytoplasmic Ribosomal Protein Gene Family | AT4G17390 | 93.529 | 6.29e-106 | 300 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops1g02029 | K02877 | - | zju:107415665 | 323.168 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops1g02029 | 1 | 40930221 | 40933285 | Rops2g04285 | 2 | 78091293 | 78093208 | PCT |