Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02028 ATGGCACCCAAGAAGGATGAACCAATTAGGAAAACAATGAACAGAGGAGCATGGACACCCGAGGAAGATCAGAAGCTAGTTCAGTGCATTGAAATTCACGGTGCAAAGAGGTGGAAGACTGTTGCAGTTAAATCAGGTCTAAACAGATGTGGAAAGAGTTGCAGGTTGAGATGGTTAAACTATCTGAGACCCAATATTAAGAGGGGCAACATATCAGTTGAAGAAGTTGATTTGATTATTAGGCTTCACAAACTATTGGGAAACAGGTGGTCTTTGATAGCTAAGAGGCTTCCAGGACGAACAGACAATGAAATTAAAAACTATTGGAATACTTATTTGTGCAAAAAAGTTAATCACGAAAAGGCAAAAACAGAAACTTCAGTGGCGCAAGAAACACATACGACTCAGGATAATGGGGAAAGAGCAGCTTTGGAGATTGAGGAGGCCATTGATGTAAGTGGGGACTCAGAAGGTAACTTTGATGTGAATGAATTCTTCAACTTCTCCATTGAAGGACCCTTTGCGCTGGATGGGATGCACAAGTATCTAGAACTTGATGAAATTCCAGATATCGTGGAGTAG 582 0.4107 MAPKKDEPIRKTMNRGAWTPEEDQKLVQCIEIHGAKRWKTVAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEVDLIIRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNTYLCKKVNHEKAKTETSVAQETHTTQDNGERAALEIEEAIDVSGDSEGNFDVNEFFNFSIEGPFALDGMHKYLELDEIPDIVE* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02028 193 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Rops1g02028 193 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Rops1g02028 193 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Rops1g02028 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Rops1g02028 193 Gene3D - 72 145 - -
Rops1g02028 193 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 136 - -
Rops1g02028 193 Gene3D - 9 68 - -
Rops1g02028 193 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Rops1g02028 193 FunFam Transcription factor TT2 71 141 - -
Rops1g02028 193 CDD SANT 72 113 IPR001005 -
Rops1g02028 193 SMART sant 67 115 IPR001005 -
Rops1g02028 193 SMART sant 14 64 IPR001005 -
Rops1g02028 193 FunFam MYB-related transcription factor 14 67 - -
Rops1g02028 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Rops1g02028 193 CDD SANT 17 62 IPR001005 -
Rops1g02028 193 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02028 Rops-Chr1 40911894 40912947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02028 5 176 MYB Transcription Factor Family AT5G52600 48.295 2.98e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g02028 Myb_DNA-binding 9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02028 K09422 - gmx:100791381 303.523