Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02027 ATGCTACAACCATCAGTTGCTTCTTCCATGATCCACCGTTTTAGGTTGACTGAGTACAGTGCAACTAAAAATCAAAAGTATCTTCCTGCAACCTTCGTAGACTATGGTCTTAACTTAAAGCTGAAGACTGCAACTCTAAGAGTAAGAGGAGGAAGACAGTGGAAATGTGGCATTTACCGTGCTAGCAGAAGAGAAAATGAAGCTAGATTGTCTACAGGATGGTTGGATTTTATATCTGATGTTGGCTTGAAGGCAGGAGACATTGTAGAATTTCAATCTATTGATCCATCAAAGAATGATATTTTAGTTAATTTAAGAAGTAATTGA 327 0.3731 MLQPSVASSMIHRFRLTEYSATKNQKYLPATFVDYGLNLKLKTATLRVRGGRQWKCGIYRASRRENEARLSTGWLDFISDVGLKAGDIVEFQSIDPSKNDILVNLRSN* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02027 108 ProSiteProfiles B3 DNA-binding domain profile. 11 108 IPR003340 GO:0003677
Rops1g02027 108 SMART B3_2 11 107 IPR003340 GO:0003677
Rops1g02027 108 CDD B3_DNA 7 95 IPR003340 GO:0003677
Rops1g02027 108 Gene3D - 6 107 IPR015300 -
Rops1g02027 108 Pfam B3 DNA binding domain 17 107 IPR003340 GO:0003677
Rops1g02027 108 SUPERFAMILY DNA-binding pseudobarrel domain 15 102 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02027 Rops-Chr1 40898831 40901787 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops1g02027 B3 7.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02027 - K09287 aly:9329448 41.5874