Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02026 ATGGAAGAAGCTGTCCCCATAGACAGTGACGTTCAACCAACCTCTTTCACCACCGCCTCTTCTTCCTCCTCCTCCTCCACAGAGAAGAAACCTAAAGGCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGGTGTGGATAAGAAAAAGATGATGAAGAGAAATGAGAAGCACCCAGCATATCGTGGAGTACGCAAGCGTCAATGGGGCAAATGGGTATCAGAAATCAGAGAACCAAAGAAAAAGTCCAGAATTTGGCTCGGCTCTTTTCCAACACCAGAAATGGCGGCTCGAGCCCATGATGTTGCGGCTCTAGCCATCAAAGGCAGCTCGGCTTTCCTTAATTTCCCCGAATTAGCCGCTCAGCTTCCACGCCCAGCCACCACTTCCCCTAAGGATATTCAAGCCGCCGCCGCCAAAGCAGCTGCAATCAATTATGAAGCCCAAGCCCAGGCCCATATACAGTCATCTAATTCATCGTTAACTGATGAGGATGACACCTTCTTTGACCTCCCTGATCTCTTACTAGACTCAAATCATCACAGTGCAGGTGAGTTTCGTTACTCCACGCCGTTGCTCTTTGCCGGAGCTGAACATCTTGACTCGAGTTTTCGGCTGGAAGAGCCTTCCCCGTGGGAGTCTTACTCATTCGTAGAAGGTTAA 663 0.4902 MEEAVPIDSDVQPTSFTTASSSSSSSTEKKPKGEEEEEEEEEEVGVDKKKMMKRNEKHPAYRGVRKRQWGKWVSEIREPKKKSRIWLGSFPTPEMAARAHDVAALAIKGSSAFLNFPELAAQLPRPATTSPKDIQAAAAKAAAINYEAQAQAHIQSSNSSLTDEDDTFFDLPDLLLDSNHHSAGEFRYSTPLLFAGAEHLDSSFRLEEPSPWESYSFVEG* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02026 220 MobiDBLite consensus disorder prediction 10 27 - -
Rops1g02026 220 FunFam Ethylene-responsive transcription factor 2 59 118 - -
Rops1g02026 220 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Rops1g02026 220 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Rops1g02026 220 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Rops1g02026 220 MobiDBLite consensus disorder prediction 1 64 - -
Rops1g02026 220 CDD AP2 61 119 IPR001471 GO:0003700|GO:0006355
Rops1g02026 220 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Rops1g02026 220 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
Rops1g02026 220 MobiDBLite consensus disorder prediction 44 58 - -
Rops1g02026 220 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Rops1g02026 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 178 - -
Rops1g02026 220 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02026 Rops-Chr1 40877622 40878447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02026 48 209 AP2-EREBP Transcription Factor Family AT2G44940 46.635 1.13e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops1g02026 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02026 - - gmx:100812293 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02026 1 40877622 40878447 Rops2g04291 2 78180446 78181606 PCT