Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops1g02023 | ATGACGGTTGAAAAGGAAGATTTGGGTTTGAGTCTTAGCTTAAGCTTCCCTCAGAATCCATCAAAACCTCTACAACTCAATCTCATGTCATCTTCTACACATTCTTCTTCTCCTTCTGGGTACAATCCTCAGAAACCCTCTTGGAACGAGGCTTTCAATTCTTCAGATCGAGATTCAGAAACATGCAGAGGCGAAGGCCGATCTTTACTCCGTGGAATCGATGTGAATAGGTTGCCTTGTGGTGTTGATTGTGAAGAGGAGGGAGGTGTTTCATCTCCAAACAGCACTGTTTCAAGCGTGAGTGGTAAAAGAAGCGAAAGGGAGGCCAATGGAGAAGAACGTGACATGGAAAGAGCTTGTTCTAGAGGGATCAGTGACGAAGAAGATGGTGAAACCTCAAGGAAAAAGCTTAGACTCTCCAAAGACCAGTCAATTATTCTAGAAGAGAGTTTCAAAGAGCACAATACTCTTAATCCAAAACAAAAGTCGGCACTGGCAAAGCAATTAGGCCTTCGAGCACGACAAGTAGAGGTGTGGTTCCAAAACAGAAGAGCAAGGACCAAGCTGAAACAAACCGAGGTAGATTGCGAGTTTTTGAAAAGGTGCTGTGAGAATCTGACAGAGGAAAATAGGAGGTTGCAGAAGGAAGTTCAAGAGCTTAGAGCACTGAAACTTTCCCCTCAATTCTACATGCAGATGACCCCACCCACAACTCTTACCATGTGCCCCTCTTGTGAGCGTGTTGCTGTTCCACCCTCTGCCGTTGATGCTGCCACGCGTCACCATCCTATGGCTCCAACTCACCCTCGCCCTTTTCCTATTGGCCCATGGGCCACCACTGCTCCCATTTCGCACAGGCCCTTCGATTCCTTTCGTCCCAGATCTTGA | 888 | 0.4685 | MTVEKEDLGLSLSLSFPQNPSKPLQLNLMSSSTHSSSPSGYNPQKPSWNEAFNSSDRDSETCRGEGRSLLRGIDVNRLPCGVDCEEEGGVSSPNSTVSSVSGKRSEREANGEERDMERACSRGISDEEDGETSRKKLRLSKDQSIILEESFKEHNTLNPKQKSALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPPSAVDAATRHHPMAPTHPRPFPIGPWATTAPISHRPFDSFRPRS* | 296 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops1g02023 | 295 | Pfam | Homeobox associated leucine zipper | 190 | 224 | IPR003106 | GO:0006355|GO:0043565 | |
Rops1g02023 | 295 | MobiDBLite | consensus disorder prediction | 105 | 136 | - | - | |
Rops1g02023 | 295 | MobiDBLite | consensus disorder prediction | 12 | 55 | - | - | |
Rops1g02023 | 295 | PRINTS | Lambda-repressor HTH signature | 161 | 170 | IPR000047 | GO:0003677 | |
Rops1g02023 | 295 | PRINTS | Lambda-repressor HTH signature | 170 | 186 | IPR000047 | GO:0003677 | |
Rops1g02023 | 295 | CDD | homeodomain | 134 | 191 | IPR001356 | GO:0003677 | |
Rops1g02023 | 295 | Pfam | Homeodomain | 134 | 188 | IPR001356 | GO:0003677 | |
Rops1g02023 | 295 | ProSiteProfiles | 'Homeobox' domain profile. | 130 | 190 | IPR001356 | GO:0003677 | |
Rops1g02023 | 295 | SMART | HOX_1 | 132 | 194 | IPR001356 | GO:0003677 | |
Rops1g02023 | 295 | MobiDBLite | consensus disorder prediction | 84 | 136 | - | - | |
Rops1g02023 | 295 | SMART | halz | 190 | 233 | IPR003106 | GO:0006355|GO:0043565 | |
Rops1g02023 | 295 | ProSitePatterns | 'Homeobox' domain signature. | 165 | 188 | IPR017970 | GO:0000981|GO:0006355 | |
Rops1g02023 | 295 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Rops1g02023 | 295 | MobiDBLite | consensus disorder prediction | 89 | 104 | - | - | |
Rops1g02023 | 295 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 8 | 260 | - | - | |
Rops1g02023 | 295 | FunFam | Homeobox-leucine zipper protein 18 | 121 | 195 | - | - | |
Rops1g02023 | 295 | Gene3D | - | 138 | 188 | - | - | |
Rops1g02023 | 295 | SUPERFAMILY | Homeodomain-like | 125 | 191 | IPR009057 | - | |
Rops1g02023 | 295 | Coils | Coil | 189 | 226 | - | - | |
Rops1g02023 | 295 | Pfam | HD-ZIP protein N terminus | 3 | 108 | IPR006712 | GO:0005634 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops1g02023 | Rops-Chr1 | 40779507 | 40781521 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops1g02023 | 1 | 295 | Homeobox Transcription Factor Family | AT4G16780 | 64.000 | 6.17e-113 | 326 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-HD-ZIP | Rops1g02023 | HD-ZIP_N | 7.9e-33 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops1g02023 | K09338 | - | gmx:100787231 | 472.626 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops1g02023 | 1 | 40779507 | 40781521 | Rops2g04297 | 2 | 78368634 | 78370606 | PCT |