Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02023 ATGACGGTTGAAAAGGAAGATTTGGGTTTGAGTCTTAGCTTAAGCTTCCCTCAGAATCCATCAAAACCTCTACAACTCAATCTCATGTCATCTTCTACACATTCTTCTTCTCCTTCTGGGTACAATCCTCAGAAACCCTCTTGGAACGAGGCTTTCAATTCTTCAGATCGAGATTCAGAAACATGCAGAGGCGAAGGCCGATCTTTACTCCGTGGAATCGATGTGAATAGGTTGCCTTGTGGTGTTGATTGTGAAGAGGAGGGAGGTGTTTCATCTCCAAACAGCACTGTTTCAAGCGTGAGTGGTAAAAGAAGCGAAAGGGAGGCCAATGGAGAAGAACGTGACATGGAAAGAGCTTGTTCTAGAGGGATCAGTGACGAAGAAGATGGTGAAACCTCAAGGAAAAAGCTTAGACTCTCCAAAGACCAGTCAATTATTCTAGAAGAGAGTTTCAAAGAGCACAATACTCTTAATCCAAAACAAAAGTCGGCACTGGCAAAGCAATTAGGCCTTCGAGCACGACAAGTAGAGGTGTGGTTCCAAAACAGAAGAGCAAGGACCAAGCTGAAACAAACCGAGGTAGATTGCGAGTTTTTGAAAAGGTGCTGTGAGAATCTGACAGAGGAAAATAGGAGGTTGCAGAAGGAAGTTCAAGAGCTTAGAGCACTGAAACTTTCCCCTCAATTCTACATGCAGATGACCCCACCCACAACTCTTACCATGTGCCCCTCTTGTGAGCGTGTTGCTGTTCCACCCTCTGCCGTTGATGCTGCCACGCGTCACCATCCTATGGCTCCAACTCACCCTCGCCCTTTTCCTATTGGCCCATGGGCCACCACTGCTCCCATTTCGCACAGGCCCTTCGATTCCTTTCGTCCCAGATCTTGA 888 0.4685 MTVEKEDLGLSLSLSFPQNPSKPLQLNLMSSSTHSSSPSGYNPQKPSWNEAFNSSDRDSETCRGEGRSLLRGIDVNRLPCGVDCEEEGGVSSPNSTVSSVSGKRSEREANGEERDMERACSRGISDEEDGETSRKKLRLSKDQSIILEESFKEHNTLNPKQKSALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPPSAVDAATRHHPMAPTHPRPFPIGPWATTAPISHRPFDSFRPRS* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02023 295 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Rops1g02023 295 MobiDBLite consensus disorder prediction 105 136 - -
Rops1g02023 295 MobiDBLite consensus disorder prediction 12 55 - -
Rops1g02023 295 PRINTS Lambda-repressor HTH signature 161 170 IPR000047 GO:0003677
Rops1g02023 295 PRINTS Lambda-repressor HTH signature 170 186 IPR000047 GO:0003677
Rops1g02023 295 CDD homeodomain 134 191 IPR001356 GO:0003677
Rops1g02023 295 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Rops1g02023 295 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Rops1g02023 295 SMART HOX_1 132 194 IPR001356 GO:0003677
Rops1g02023 295 MobiDBLite consensus disorder prediction 84 136 - -
Rops1g02023 295 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Rops1g02023 295 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Rops1g02023 295 MobiDBLite consensus disorder prediction 1 63 - -
Rops1g02023 295 MobiDBLite consensus disorder prediction 89 104 - -
Rops1g02023 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 8 260 - -
Rops1g02023 295 FunFam Homeobox-leucine zipper protein 18 121 195 - -
Rops1g02023 295 Gene3D - 138 188 - -
Rops1g02023 295 SUPERFAMILY Homeodomain-like 125 191 IPR009057 -
Rops1g02023 295 Coils Coil 189 226 - -
Rops1g02023 295 Pfam HD-ZIP protein N terminus 3 108 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02023 Rops-Chr1 40779507 40781521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02023 1 295 Homeobox Transcription Factor Family AT4G16780 64.000 6.17e-113 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops1g02023 HD-ZIP_N 7.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02023 K09338 - gmx:100787231 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02023 1 40779507 40781521 Rops2g04297 2 78368634 78370606 PCT