Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02017 ATGGGCACTTGCTTAGTTGGTGCACTTCAGGAAACAACAACGTGTGGGCACTTGCTTAGTGGAGAGCAGCAGCTGTCAGTGAAGCCAGCATGGGCAAAGACACTTGATGATGGAGAGCATGGGTTGCACAGCTTGAAGATTCATAATCCCCTTCTCAATACTAGTATTTCCAATGAACTTCTTAAAACATGTATTGACACGAAAACGAAGATATACATTGTGATGGAATATGCAACAGGAGGCCAACTATTGGACAAGATGTCATATGCCAAGCAGTTGAATGAGAACGAGGCAAGAAAACTATTCCACCAACTTATTAATGCCTTGGATTACTGCCATAACAAAGGAGTTTATCATCGAGATCTAATGCCAGAAAACTTGCTCCTTGACAACAAGGGAAATCTCAAAGTGTCTGATTTTGGATTAAGTGCACTGAAAAAGCCTAATGATGTCTTAAACACGCGGTGTGGATCCCCTTACTATGTGGCACTTGAGGTTCTATTGAGCAAAGGGTATGATGGAGCAACTGCTGATGTTTGGTCCTGTAGGGTGATCCTTTTTGAATTAGATGACCAGAACTTGATGATCTTGTATCGTAAGATATGCAGAGCAGAATATGTATGTCCACCATGGTTTACTCAAAATCAAAAGAAACTAATTGCCAAAATACTTAAACCACATCTTGGAAAGCGGATAACTATACCAGATATTGTTGAAGATGAATGGTTTCAGGTCGACCATAAGCCTGCTTGTTCATATGAATTTGATCAGATCATTAACTTGGATGATGATAGTGCTGCTTTCGATTTAATTGAGTGCCACTGTTATGTCTGTGACTCCCTTACACCTTGTCTGAAGTGGGGCACTGGCCTTTCAAGTACAGATCATTGTTATGCAACTGATAAATCAGAAATTTGGAAAACCCTGAGGAAAAATTGCAAGTTGGTCAAGACAGCTCCGTTACCAGCTTCATCTAATTATGGTACTTCAGGTGATGTTGTGAATTCCCAACATATATGTGGCTACCCTACAAGAGCTAATATCTTCATCTATGCAGGTTGGTCTCAAGAAAAATACCAACCAAACTCACCCTTTGAAAGCAACCTTAACAACTTTTTGTCTTTAGTTGTGAGTTCATCGTCTGAAGTTACAATAGTTTTGCTATTGGAAATGGAAGCACAACACCAGAGGGTGCCATATATGGCTTATACCAGTGCAGAGGTGACTTGCATCCAATTGATTGCTCAAGGTGTGACTAATGATGTTGAGTTCTTCAAGAGAAGAGATGATGTTCTTGCTGATTTGCTAACAGCTAATGGATTTACCAATCAAAAATTATATTCAATTGCATTCCTTTTGTTATTATTCTTCCTTTTTATTTCATTGAATGGAAAGTTAATTGCATAA 1407 0.3916 MGTCLVGALQETTTCGHLLSGEQQLSVKPAWAKTLDDGEHGLHSLKIHNPLLNTSISNELLKTCIDTKTKIYIVMEYATGGQLLDKMSYAKQLNENEARKLFHQLINALDYCHNKGVYHRDLMPENLLLDNKGNLKVSDFGLSALKKPNDVLNTRCGSPYYVALEVLLSKGYDGATADVWSCRVILFELDDQNLMILYRKICRAEYVCPPWFTQNQKKLIAKILKPHLGKRITIPDIVEDEWFQVDHKPACSYEFDQIINLDDDSAAFDLIECHCYVCDSLTPCLKWGTGLSSTDHCYATDKSEIWKTLRKNCKLVKTAPLPASSNYGTSGDVVNSQHICGYPTRANIFIYAGWSQEKYQPNSPFESNLNNFLSLVVSSSSEVTIVLLLEMEAQHQRVPYMAYTSAEVTCIQLIAQGVTNDVEFFKRRDDVLADLLTANGFTNQKLYSIAFLLLLFFLFISLNGKLIA* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02017 468 Gene3D Transferase(Phosphotransferase) domain 1 46 277 - -
Rops1g02017 468 ProSiteProfiles Protein kinase domain profile. 1 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02017 468 FunFam Maternal embryonic leucine zipper kinase 8 281 - -
Rops1g02017 468 SUPERFAMILY Protein kinase-like (PK-like) 63 244 IPR011009 -
Rops1g02017 468 Pfam Protein kinase domain 62 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02017 468 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 64 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02017 Rops-Chr1 40721802 40724970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02017 67 268 CBL-interacting serine-threonine protein kinases AT1G01140 55.660 5.54e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Rops1g02017 Pkinase 3.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02017 - - mtr:11440772 343.584