Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02016 ATGGCGAACCCTGTTGAACTTTCAGCCCTTGATCGCATAAAACTGCATCTTCTAGGGGAACTATCTCCCCTGCCACGTGTCACTTCCCCCGTTGACCTTACCCAAAACAACAACAACCTCTGGTTTCAATTTGATGAACCAAACCCAACTTCATCTCAATCTAACTCCCAATCATCAAGCTCTGATTCATCTACAACGGTGGATCAGTACTTAACTGAACTCCTCGACTTTCCAACCGATTCCATCGCTTCAACAACGGATAATCAGTTTCCACTATTTGAATTTAAACCCAAAATTGTAGTAATTGACCTTGAAACCCAAACGTCGCCGTTTGACTTCAGTTTTTCAACATCATCGGATCCTGTGGAGAAGAAACCTCAACCGAATCGAAAGCCCTCCTTGCAAATCTCTCTTCCCAAGAAGACAGAGTGGATCCAGTTCGGAGATCCCGAGGTTCCAGAAATGGCGGCACAGCCTGAAGAAGAGAAGAAACACTACAGAGGGGTCCGACAGAGACCGTGGGGCAAGTACGCTGCGGAGATCCGAGACCCGAATAAGCGTGGATCCAGAGTGTGGCTTGGAACATTCGACACGGCTATTGAAGCCGCTAAAGCCTACGACCGAGCCGCGTTTAAGCTTCGCGGCTCAAAAGCCATACTCAACTTCCCACTCGAAGCCGGCGCCGATGAGCGTAAACGCCGCCGAGAAGAGGAGGAAGAGGTGGAGCAAGTTGTGAAGAGAGAGAAAACAGTGGAAACGGACATTAACCGTATAAGAGATGCTCCATTAACGCCGTCTAGTTGGTTAGGGTTTTGGGATACTGATGTAAAAGGTGTTTTCACCATACCACCCTTGTCACCGTTATCTCCCCACCCGTCGTTGGGTTATCCTCAGCTTATGGTTGTATAG 909 0.484 MANPVELSALDRIKLHLLGELSPLPRVTSPVDLTQNNNNLWFQFDEPNPTSSQSNSQSSSSDSSTTVDQYLTELLDFPTDSIASTTDNQFPLFEFKPKIVVIDLETQTSPFDFSFSTSSDPVEKKPQPNRKPSLQISLPKKTEWIQFGDPEVPEMAAQPEEEKKHYRGVRQRPWGKYAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEAGADERKRRREEEEEVEQVVKREKTVETDINRIRDAPLTPSSWLGFWDTDVKGVFTIPPLSPLSPHPSLGYPQLMVV* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02016 302 Gene3D AP2/ERF domain 164 225 IPR036955 GO:0003700|GO:0006355
Rops1g02016 302 MobiDBLite consensus disorder prediction 40 67 - -
Rops1g02016 302 FunFam Ethylene-responsive transcription factor 2 164 225 - -
Rops1g02016 302 Pfam AP2 domain 165 215 IPR001471 GO:0003700|GO:0006355
Rops1g02016 302 PRINTS Ethylene responsive element binding protein signature 166 177 IPR001471 GO:0003700|GO:0006355
Rops1g02016 302 PRINTS Ethylene responsive element binding protein signature 205 225 IPR001471 GO:0003700|GO:0006355
Rops1g02016 302 SMART rav1_2 165 229 IPR001471 GO:0003700|GO:0006355
Rops1g02016 302 ProSiteProfiles AP2/ERF domain profile. 165 223 IPR001471 GO:0003700|GO:0006355
Rops1g02016 302 PANTHER DNA-BINDING DOMAIN 66 236 IPR044808 GO:0003700|GO:0009873
Rops1g02016 302 CDD AP2 164 223 IPR001471 GO:0003700|GO:0006355
Rops1g02016 302 MobiDBLite consensus disorder prediction 113 134 - -
Rops1g02016 302 SUPERFAMILY DNA-binding domain 165 224 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02016 Rops-Chr1 40704377 40705479 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02016 1 302 AP2-EREBP Transcription Factor Family AT5G47230 48.580 3.50e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops1g02016 AP2 4.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02016 K09286 - gmx:100800788 340.117