Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02015 ATGTACGAACAGAGTGCCTATGACTCCGATTTGGCCCTTTTGGACTCCATTCGCCATCACTTGCTCGGAGATTCCGAGGTATGTACATTCGGAGCCCCATCTTCTAATTCGGGTAACACTCCAGTTTACTGTCGGAGCTCCAGTTTCAGCAACTTGTACCCGTGCCTGAGTGACAATTGGGGAGAACTTCCACTCAAGGAAGACGATTCAGAAGACATGGTACTTTACGGTGTGCTTCGCGATGCCGTTAACGTTGGGTGGGTCCCATCACTGGACGCAGGCTCACCGGAGAGTTTCTCGTCGGTGACCGTCAAATCTGAGCCGGATCTTTTTCCGGCTGTTCAGAGTCCACCGGCGCAGGTCGTTCCCGCTCCGGTGATTAAGCAAGAGAAGCCGGTCCCGGCGGCTGCTCCGTCGAAGGGGAAACATTACCGCGGCGTGAGACAACGGCCGTGGGGGAAATTCGCGGCGGAGATCCGTGACCCGGCTAAGAATGGGGCTCGGGTTTGGCTCGGAACATTTGAAACGGCTGAGGATGCCGCTCTGGCTTATGATCGAGCCGCTTACAGAATGCGTGGCTCGCGGGCTTTGCTTAATTTCCCTCTTCGGGTCAATTCGGGTGAACCCGACCCGGTTAGGGTCACGTCGAAGCGTTCCTCGTCGGAGTCGTCTTCTTCTTCTTCGTCGGAGAGTGGATCGACGGTGAAGCGAAGGAAGAAGATGGTGGGGCCAACTGTGACAGCTCAAGTTGGATTGAAAATGGAGCAAGTGGGGAGTCAAGTGGCATAG 789 0.5551 MYEQSAYDSDLALLDSIRHHLLGDSEVCTFGAPSSNSGNTPVYCRSSSFSNLYPCLSDNWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLDAGSPESFSSVTVKSEPDLFPAVQSPPAQVVPAPVIKQEKPVPAAAPSKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSSESSSSSSSESGSTVKRRKKMVGPTVTAQVGLKMEQVGSQVA* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02015 262 PANTHER DNA-BINDING DOMAIN 120 230 IPR044808 GO:0003700|GO:0009873
Rops1g02015 262 Pfam AP2 domain 143 193 IPR001471 GO:0003700|GO:0006355
Rops1g02015 262 CDD AP2 142 201 IPR001471 GO:0003700|GO:0006355
Rops1g02015 262 SMART rav1_2 143 207 IPR001471 GO:0003700|GO:0006355
Rops1g02015 262 ProSiteProfiles AP2/ERF domain profile. 143 201 IPR001471 GO:0003700|GO:0006355
Rops1g02015 262 MobiDBLite consensus disorder prediction 212 232 - -
Rops1g02015 262 Gene3D AP2/ERF domain 142 204 IPR036955 GO:0003700|GO:0006355
Rops1g02015 262 FunFam Ethylene-responsive transcription factor 2 142 202 - -
Rops1g02015 262 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700|GO:0006355
Rops1g02015 262 PRINTS Ethylene responsive element binding protein signature 167 183 IPR001471 GO:0003700|GO:0006355
Rops1g02015 262 MobiDBLite consensus disorder prediction 205 262 - -
Rops1g02015 262 SUPERFAMILY DNA-binding domain 143 203 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02015 Rops-Chr1 40667205 40668437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02015 9 257 AP2-EREBP Transcription Factor Family AT4G17500 57.088 2.04e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops1g02015 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02015 K09286 - gmx:100819649 348.591