Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02014 ATGGCTGTACTAAGCTTTCTTATCCTTACACTTGTCTATCTTCAAGTTTTGTTAGTTTTTGCAAACGTTAATTTGAGTTCGACACTCTCTACCAATGACAACCATGCATGGCTTTCACCTACGGGTGAATTTGCTTTTGGATTTCGCCAACTTAATGGCCCAAGCCTCTTCTCAGTTGCAATCTGGTATGACAAAATACCCGACAAGACCATTGTTTGGAATGCAAAAGTAGATGATAGCCTTGTTGAAGCACCAGCAGGATCACAGGTTAACCTCACATCAGAAGGGCTCACGCTGATAAATCCTAAAGGGGAGTCTCTATGGACGGCACAGCCAAACGCAGTTGTGTCCTATGGAGATATGCTTGACACTGGGAACTTTGTTCTTGTAAACAGGGAGTCTAATTTTGTGTGGGAAAGTTTCGAGAATCCCACAGACACGTTGTTACCTAACCAAACTCTGGAGCTAGATGGCAAGCTAACTTCTCGATTAACAGAGACCAATTACACGAGTGGAAGGTTCCAACTTTATTTTGATGGAGCTAATGCCTTGCTGAGTCCCCTTGGTTGGCCTTCTCAAAATCGTTATGACCATTATTATAAAATTGATGCATCTGGCTCTGCTTCACGATTAGTGTTCGATGAATCAGGGGATATTTATGTAGAGACAAAGAATGGGTCTAAAGTGCCACCTCAAGGTCCAAAATGGGATAATTTAACTCTCGATCCTAAGGAGAATTACTACAGAGCAACACTTGACTTCTATGGAGTTTTCACACAGTATGTTCATCCAAAGGGGTCCAATTCCCAGAAAGGGTGGGAAGTCTTGAGGTATGTTCCTGACAACATATGCACTGCAATATCCAACGAACTTGGTAGCGGTCCTTGTTGGTATAATAGCTACTGCTCCATGAAAAGTCAGAGGCCTACTTGCACATGTCTTGATGGGTATTCGCTGGTAGATCCAAGTAATGAATTTGGTGGATGCCAACCCAAGAATTTGACCCTTGGTTGTGGAGCTGATAGTGGAGGATTGCAAGCAAGACCAGAAGAACTATATGAATTGCTTGAATCAAAAGGTATAAATTTTCCTTTTGGAGATTATGAAAGGATGCAACCTTACTCTCAACAGGAATGCCAGCAATCTTGCTTGCACGATTGCATGTGTGCTGCTGCCGTTTTTAACAGTGACCACACAGCTTGTTGGAAGAAAAGATTACCGCTTATTAATGGAAGAGTAGAAGGTGGAGTCTCAACCTTGCTCTTTATCAAAACAAGAGTTAGCCCTCTGAGTAACTTTGATCCTGGTGCAAACAAGGAACTTCCCACTAGTCCTGATTCAAAGAATGAAGATCAAGCCAGGCCAATTATTCTGGGGTCACTGATTGGCTCCCTTGTCGTTAACAGTATACTCCTGACTACGGTTGTTTTGTTTATTCTCTTGAAACCAAAAAGGATTGTCCAAGCTACAAGTCTTTTGGATACAAATTTACATTCGTTTTCTTATGAAGTACTGAAAAATGCCACACGGGATTTTAGTGAAGAGTTAGGCAGGGGTTCCTTTGGTATTGTTTACAAAGGTACACTAGACTCAGTACTATCTCATAACGTGGTTGCTGTCAAGAGATTGGACAGGTTGGGACAAGAACGAGAGAAGGAATTTAAGACTGAGTTGAGTGCCATTGGTAAAACCTGTCACAAAAATCTGGTACGGTTGATTGGATTTTGTGATGAGGGAACCCACAGACTACTGGTCTATGAGTTCATGAGCAATGGTTCTCTAGCAGATGTCTTATTTGGACAACCTAAACCCATTTGGAATCTAAGGGTTCGATTTGCCTTGGGGATTGCAAGAGGGTTGGTGTACTTGCACGAAGAGTGTGAAGCTCCCATCATTCATTGTGATATAAAACCTCAAAATATACTCATAGATGAGCATTCCACTCCAAAGATCTCAGACTTTGGGTTGGCCAAGTTGTTGTTCTCTGATCAAAGTAGAACCAATACCATGATACGAGGAACTAAAGGATATGTGGCTCCTGAATGGTTCAAGAATGTACCTGTGACGGTTAAAGTTGATGTTTATAGCTTTGGTGTATTGTTGTTGGAAATCATTTGCTGCAGAAGAAATGTGCTGCTAAAGGAATCCGGGGAGGAAGATAAGGCCATATTGATGGATTGGGCTTATGATTGCTATATGGAAGGGAGAATAGATGCTCTGGTAGATGATGACAAGGTGGCAATGGTTGACCATGGCAGGTTACAGAGGTGGGTAAAGGTAGCAATTTGGTGCATTCAAGAGCATCCTGAAATGAGGCCAACAATGGGGATGGTCATGCAAATGTTAGAAGGCTTTGTTGAAGTCCCTAATCCACCATTTCTTCATTCCTACAATTAG 2397 0.4205 MAVLSFLILTLVYLQVLLVFANVNLSSTLSTNDNHAWLSPTGEFAFGFRQLNGPSLFSVAIWYDKIPDKTIVWNAKVDDSLVEAPAGSQVNLTSEGLTLINPKGESLWTAQPNAVVSYGDMLDTGNFVLVNRESNFVWESFENPTDTLLPNQTLELDGKLTSRLTETNYTSGRFQLYFDGANALLSPLGWPSQNRYDHYYKIDASGSASRLVFDESGDIYVETKNGSKVPPQGPKWDNLTLDPKENYYRATLDFYGVFTQYVHPKGSNSQKGWEVLRYVPDNICTAISNELGSGPCWYNSYCSMKSQRPTCTCLDGYSLVDPSNEFGGCQPKNLTLGCGADSGGLQARPEELYELLESKGINFPFGDYERMQPYSQQECQQSCLHDCMCAAAVFNSDHTACWKKRLPLINGRVEGGVSTLLFIKTRVSPLSNFDPGANKELPTSPDSKNEDQARPIILGSLIGSLVVNSILLTTVVLFILLKPKRIVQATSLLDTNLHSFSYEVLKNATRDFSEELGRGSFGIVYKGTLDSVLSHNVVAVKRLDRLGQEREKEFKTELSAIGKTCHKNLVRLIGFCDEGTHRLLVYEFMSNGSLADVLFGQPKPIWNLRVRFALGIARGLVYLHEECEAPIIHCDIKPQNILIDEHSTPKISDFGLAKLLFSDQSRTNTMIRGTKGYVAPEWFKNVPVTVKVDVYSFGVLLLEIICCRRNVLLKESGEEDKAILMDWAYDCYMEGRIDALVDDDKVAMVDHGRLQRWVKVAIWCIQEHPEMRPTMGMVMQMLEGFVEVPNPPFLHSYN* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02014 798 Gene3D - 19 142 IPR036426 -
Rops1g02014 798 Pfam PAN-like domain 368 404 IPR003609 -
Rops1g02014 798 ProSiteProfiles Protein kinase domain profile. 510 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02014 798 CDD STKc_IRAK 516 785 - -
Rops1g02014 798 Gene3D Phosphorylase Kinase; domain 1 479 588 - -
Rops1g02014 798 SUPERFAMILY Protein kinase-like (PK-like) 494 783 IPR011009 -
Rops1g02014 798 FunFam Serine/threonine-protein kinase 145 287 - -
Rops1g02014 798 SMART serkin_6 510 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02014 798 CDD PAN_AP_plant 335 425 - -
Rops1g02014 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 19 142 - -
Rops1g02014 798 ProSitePatterns Protein kinases ATP-binding region signature. 516 541 IPR017441 GO:0005524
Rops1g02014 798 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 28 792 - -
Rops1g02014 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 790 - -
Rops1g02014 798 Pfam D-mannose binding lectin 70 159 IPR001480 -
Rops1g02014 798 PIRSF SRK 1 798 IPR024171 GO:0004674
Rops1g02014 798 SMART blect_4 28 144 IPR001480 -
Rops1g02014 798 Pfam Protein kinase domain 513 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02014 798 ProSiteProfiles Bulb-type lectin domain profile. 22 142 IPR001480 -
Rops1g02014 798 Gene3D Transferase(Phosphotransferase) domain 1 589 787 - -
Rops1g02014 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Rops1g02014 798 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 164 IPR036426 -
Rops1g02014 798 FunFam S-receptor-like serine/threonine-protein kinase 482 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02014 Rops-Chr1 40648118 40650813 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02014 427 788 Receptor kinase-like Gene Family AT1G56120 39.946 4.63e-69 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Rops1g02014 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02014 - - gmx:100775269 1128.62