Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02012 ATGGCTGTTCTAACTCTTCTCATCCTTATACTTGTCTTTCTTCAAGTCTTGTTAGTTTCTGCAAACGTTAATTTGAGTTCCACACTCTCCACCAACGATTTATGGCTCTCAAATTCGGGTGAATTTGCTTTCGGATTTCGCCAACTTAATGATACGAGCAATTTCATGGTTGCAATCTGGTATCACAAAATACCAGATAAGACCATTGTTTGGAATGCAAAAACAGATGATACCCTTGTAGAAGCACCAGCAGGGTCACAGGTTAACCTCACATCAGAAGGGCTCACGCTGTCAAATCCTAAAGGGGAGTCCCTGTGGACGGCACAACCAGACGCCGTTGTGTCCTATGGAGATATGCTTGACACTGGGAACTTTGTTCTTGTAAACAGGGAATCTACTCCTGTGTGGGAAAGTTTTGAGAATCCCACAGACACATTGCTGCCTAACCAGTCTCTAGAACTACATGGCGACTTAACTTCTCGATTCTCAGAGACCAATTACACAAGTGGAAGGTTCCAACTTTATTTTCAGGATGCTAATATGTTGCTGAGTCCCCTTGGTTGGCCTTCTCAATCTCGTTATGCCTCTTATTATGAAATGGATGCCTCTGGCTCTGCTTCACGATTAGTGTTCAATGAATCAGGGGTTATTTATGTAGAGACAACGAATGGGTCTAGATTAACACCTAAAGGTCCAAAATGGGATAATTTAACTCTCGATCCTAAGGAGAATTACTACAGAGCAACACTTGACTTCTATGGAGTTTTCACACAGTATGTTCATCCAAAGGGCTCCACTGCCCAGCAAGGCTGGAGAATCTTGAGATATGTTCCTGACAACATATGCAATGCAATAACAATAAGCGATTCATTGGGTAGTGGTTCCTGTGGGTATAATAGCTACTGCTCCATGAAAGATCAGAGGCCTACTTGCACATGTCCTGATGGGTATTCGCTGGTAGATCCAAGTAATGAATTTGGTGGATGCCAACCCAAGAATTTGATCCTTGGTTGTGGAGCTGATGGTGAAGGATTGCAAGCAAGGCCAGAAGAACTATATGAATTGCTTGAATTAGAAGGTATAGATTTTCCTTATGCAGATTATGAAAAGATACAACCTTACTCTCAACAGGAATGCAAGCAATCTTGCTTGCACGATTGCATGTGTGCTGTTGCCATTTTTCACAGTGACGGCAATGTTTGTTGGAAGAAAAGATTACCGCTTATTAATGGAAGAGTAGGTGGAGTCTCAATCTTGCTCTTTATCAAAACAAGAGTTAGCCCTCTGAGTAACTTTGATCCTGGTGCAAACAAGGAACTTCCCACTAGTCCTGATTCAAAGAATGAAGATCAAGCCAAGCCAATTATTCTGGGGTCACTGATTGGCTCCCTTGTCGTTAACAGTATACTCCTGACTACGGTTGTTTTGTTTATTCTCTTGAAACCAAAAAGGATTGTCCAAGCTGCAAGTCTTTTGGAAACAAATTTACATTCGTTTTCTTATGAAGTACTGAGAAATGCCACACGGGATTTTAGTGAAGAACTAGGCAGGGGTTCCTTTGGTATTGTTTACAAAGGTACACTAGACTCTGTATCATCTCATAATGTGGTTGCTGTCAAGAGATTGGACAGGTTGGGACCAGAACGGGAGAAAGAATTTAAGACTGAGTTGAGCGCCATTGGTAAAACTGGTCACAAAAATCTGGTCCGGTTAATTGGATTTTGTGACGAGGGAATCCATAGACTACTAGTCTACGAGTTCATGAGCAATGGTACTATAGCAGATGTCTTATTTGGACAACCCAAACCCATTTGGAATCTAAGGGTTCGATTTGCCTTGGGGATTGCAAGAGGGTTGGTGTACTTGCACGAAGAGTGTGAAGCTCCCATCATTCATTGTGATATAAAACCTCAAAATATACTCATAGATGAGCATGCCACTCCAAAGATCTCAGACTTTGGGTTGGCCAAGTTGTTGTTGTCTGATCAAAGTAGAACCAATACCATGATACGAGGAACTAAAGGATATGTGGCTCCTGAATGGTTCAAGAACGTTCCTGTGACGGTTAAAGTGGATGTTTATAGCTTTGGTGTCTTGCTGTTGGAGATTATTTGCTGCAGAAGAAATGTGCTGCTGATGGAATCTGGGGAGGAAGAGAAGGCAATATTGACAGATTGGGCTTATGATTGCTACAAGGATGGGACAATAGATGCTCTGGTAGATGACGAGAAGGCTCTAGAAGACTATGGCAGGTTACAGAGGTGGGTAAAGGTAGCAATTTGGTGCATTCAAGAGCATCCTAAGGTGAGGCCAACAATGGAGATGGTCATGCAAATGCTAGAAGGCTATGTTGAAGTCCCAGATCCACCGTCTCCTGATTCCTTCAATTAG 2391 0.4237 MAVLTLLILILVFLQVLLVSANVNLSSTLSTNDLWLSNSGEFAFGFRQLNDTSNFMVAIWYHKIPDKTIVWNAKTDDTLVEAPAGSQVNLTSEGLTLSNPKGESLWTAQPDAVVSYGDMLDTGNFVLVNRESTPVWESFENPTDTLLPNQSLELHGDLTSRFSETNYTSGRFQLYFQDANMLLSPLGWPSQSRYASYYEMDASGSASRLVFNESGVIYVETTNGSRLTPKGPKWDNLTLDPKENYYRATLDFYGVFTQYVHPKGSTAQQGWRILRYVPDNICNAITISDSLGSGSCGYNSYCSMKDQRPTCTCPDGYSLVDPSNEFGGCQPKNLILGCGADGEGLQARPEELYELLELEGIDFPYADYEKIQPYSQQECKQSCLHDCMCAVAIFHSDGNVCWKKRLPLINGRVGGVSILLFIKTRVSPLSNFDPGANKELPTSPDSKNEDQAKPIILGSLIGSLVVNSILLTTVVLFILLKPKRIVQAASLLETNLHSFSYEVLRNATRDFSEELGRGSFGIVYKGTLDSVSSHNVVAVKRLDRLGPEREKEFKTELSAIGKTGHKNLVRLIGFCDEGIHRLLVYEFMSNGTIADVLFGQPKPIWNLRVRFALGIARGLVYLHEECEAPIIHCDIKPQNILIDEHATPKISDFGLAKLLLSDQSRTNTMIRGTKGYVAPEWFKNVPVTVKVDVYSFGVLLLEIICCRRNVLLMESGEEEKAILTDWAYDCYKDGTIDALVDDEKALEDYGRLQRWVKVAIWCIQEHPKVRPTMEMVMQMLEGYVEVPDPPSPDSFN* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02012 796 Pfam PAN-like domain 355 405 IPR003609 -
Rops1g02012 796 ProSiteProfiles Protein kinase domain profile. 509 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02012 796 Gene3D - 142 268 IPR036426 -
Rops1g02012 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Rops1g02012 796 FunFam S-receptor-like serine/threonine-protein kinase 481 587 - -
Rops1g02012 796 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 788 - -
Rops1g02012 796 Pfam D-mannose binding lectin 68 155 IPR001480 -
Rops1g02012 796 SMART blect_4 26 142 IPR001480 -
Rops1g02012 796 ProSitePatterns Protein kinases ATP-binding region signature. 515 540 IPR017441 GO:0005524
Rops1g02012 796 SUPERFAMILY Protein kinase-like (PK-like) 492 781 IPR011009 -
Rops1g02012 796 CDD STKc_IRAK 515 782 - -
Rops1g02012 796 Gene3D - 18 141 IPR036426 -
Rops1g02012 796 Pfam Protein kinase domain 512 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02012 796 SMART serkin_6 509 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02012 796 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 18 140 - -
Rops1g02012 796 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 22 792 - -
Rops1g02012 796 PIRSF SRK 1 796 IPR024171 GO:0004674
Rops1g02012 796 Gene3D Transferase(Phosphotransferase) domain 1 588 786 - -
Rops1g02012 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 55 182 IPR036426 -
Rops1g02012 796 ProSiteProfiles Bulb-type lectin domain profile. 20 140 IPR001480 -
Rops1g02012 796 Gene3D Phosphorylase Kinase; domain 1 478 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02012 Rops-Chr1 40484957 40487630 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02012 426 795 Receptor kinase-like Gene Family AT1G56120 38.564 1.76e-67 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Rops1g02012 Pkinase 8.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02012 - - gmx:100775269 1090.49