Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02010 ATGGCTGTTCTAACCCTTCTCATCCTTATACTTGTCTTTCTTCAAGTCTTGCTAGTTTCTTCAAACGTTTATTTGAGTTCCACACTCTCCACCAATGACAACCATGCATGGCTCTCCCCTTCGGGTGAATTTGCTTTCGGATTTCGCCAACTCAATGATACGAGCAATTTCATGGTTGCCATCTGGTATCACGAGATACCAGATAAGACCATTGTTTGGAATGCAAAAACAGATGATACCCTCGTAGAAGCACCAGCAGGGTCACAGGTTGACCTCACATCAGAAGGGCTCACGCTGTCAAATCCTAAAGGGGAGTCCCTGTGGACGGCACAACTAAACGCCGTTGTGTCCTATGGAGATATGCTTGACACTGGGAACTTTGTTCTTGTAAACAACGAATCTACTTATGTGTGGGAAAGTTTCGAGAATCCCACAGACACGTTGCTGCCTAACCAGTCTCTAAAACTAGATGGCAAGCTAACTTCTCGATTCTCAAAGACCAATTACACAAGTGGAAGGTTCCAACTTTATTTTCAGGATGCTAATATGTTGCTGAGTCCCCTTGGTTGGCCTTCTCAAACTCGTTATGGCTCTTATTATAAAATTGATGTCTCTGGCTCTGCTTCACGATTAGTGTTCAATAAATCAGGGGACATTTATGTAGAGACAACGAAGGGGACTAGATTAACACCTCAAGGTCCAAAATGGGATAATTTAACTCTCGATCCTAAGGAGAATTACTACAGAGCAACACTTGACTTCTATGGAGTTTTCACACAGTATGTTCATCCAAAGGGCTCCACTGCCCAGCAAGGCTGGAAAATCTTGAGGTATGTTCCTGACAACATATGCACTGCAATAACAATAAGCGATGACTTGGGTAGTGGTTCCTGTTGGTATAATAGCTACTGCTCCATGAAAGATCAGAGGCCTACTTGCACATGTCCTTATGGGTATTCGCCGGTAGATCCAAGTAATGAATTTGGTGGATGCCAACCCAAGAATTTGACCCTTGGTTGTGGAGCTGATAGTGAAGGATTGCAAGCAAGGCCAGAAGAACTATATGAATTGCTTGCTTTAAAAGGTATAAATTTTGCTTATGGAGATTATGAAAGGATGCAACCTTACTCTCGACAGGAATGCCAGCAATCTTGCTTGCACGATTGCATGTGTGCTGCTGTCGTTTTTAACAGTGGCCATAGAGTTTGTTGGAAGAAAAGATTACCGCTTATTAATGGAAGAGTAGACGGAGTCTCAACCTTGCTCTTTATCAAAACAAGAGTTAGCCCTCTGAGTAACTTTGATCATGGTGCAAACAAGGAACTTCCCACTAGTCCTGATTCAAAGAATGAAGATCAAGCCAACCCAATTATTCTGGGGTCACTGATTGGCTCCCTTGTTGTTAACAGTATACTCCTGACTACGGTTGTTTTATTTATTCTCTTGAAACCAAAAAGGATTGTCCATGCTGCAAGTCTTTTGGAAACAAATTTACATCCGTTTTCTTATGAAGTACTGAAAAATGCCACACGGGATTTTACTGAAGAACTAGGCAGGGGTTCCTTTGGTATTGTTTACAAAGGCACACTAGACTCTGTATCATCTCATAACGTGGTTGCTGTCAAGAGATTGGACAGGTTGGGGCAAGAACGAGAGAAGGAATTTAAGACTGAGTTGAGCGCCATTGGTAAAACTTGTCACAAAAATCTGGTACGGTTAATTGGATTTTGTGAGGAGGGAATCCATAGACTACTGGTCTATGAGTTCATGAGCAATGGTACTCTAGCGGATGTCTTATTTGGACAACCCAAACCCAATTGGAATCTAAGGGTTGGATTTGCCTTGGGGATTGCAAGAGGGTTGGTGTACTTACACGAAGAGTGTGAGACTCCCATCATTCATTGCGATATAAAACCTCAAAATATACTCATAGATGAGCATTCCACTCCAAAGATCTCTGACTTCGGGTTGGCCAAGTTGTTGTTGTCCGATCAAAGTAGAACCAATACCATGATACGAGGAACTAAAGGATATGTGGCTCCTGAATGGTTCAAGAATGTTCCTGTGACGGTTAAAGTGGATGTTTATAGCTTTGGTGTCTTGCTGTTGGAGATTATTTGCTGCAGAAGAAATGTGCTGCTGATGGAATCTGGGGAGGAAGAGAAGGCAATATTGACAGATTGGGCTTATGATTGCTATATGGAAAGGAGAATAGATGCTCTGGTAGATGATGACAAGGTGGCAATGGTTGACTATGGCAGGTTACAGAAGTGGGTAAAGATTGCAATTTGGTGCATTCAAGAGCATCCTGAAATGAGGCCAACAATGGGGATGGTCATGCAAATGCTAGAAGGCCAACAATTTGTTGAAGTCCCTGATCCATCGTCTCCTTATTCCTTCAATTAG 2406 0.4248 MAVLTLLILILVFLQVLLVSSNVYLSSTLSTNDNHAWLSPSGEFAFGFRQLNDTSNFMVAIWYHEIPDKTIVWNAKTDDTLVEAPAGSQVDLTSEGLTLSNPKGESLWTAQLNAVVSYGDMLDTGNFVLVNNESTYVWESFENPTDTLLPNQSLKLDGKLTSRFSKTNYTSGRFQLYFQDANMLLSPLGWPSQTRYGSYYKIDVSGSASRLVFNKSGDIYVETTKGTRLTPQGPKWDNLTLDPKENYYRATLDFYGVFTQYVHPKGSTAQQGWKILRYVPDNICTAITISDDLGSGSCWYNSYCSMKDQRPTCTCPYGYSPVDPSNEFGGCQPKNLTLGCGADSEGLQARPEELYELLALKGINFAYGDYERMQPYSRQECQQSCLHDCMCAAVVFNSGHRVCWKKRLPLINGRVDGVSTLLFIKTRVSPLSNFDHGANKELPTSPDSKNEDQANPIILGSLIGSLVVNSILLTTVVLFILLKPKRIVHAASLLETNLHPFSYEVLKNATRDFTEELGRGSFGIVYKGTLDSVSSHNVVAVKRLDRLGQEREKEFKTELSAIGKTCHKNLVRLIGFCEEGIHRLLVYEFMSNGTLADVLFGQPKPNWNLRVGFALGIARGLVYLHEECETPIIHCDIKPQNILIDEHSTPKISDFGLAKLLLSDQSRTNTMIRGTKGYVAPEWFKNVPVTVKVDVYSFGVLLLEIICCRRNVLLMESGEEEKAILTDWAYDCYMERRIDALVDDDKVAMVDYGRLQKWVKIAIWCIQEHPEMRPTMGMVMQMLEGQQFVEVPDPSSPYSFN* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02010 801 Pfam Protein kinase domain 514 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02010 801 SMART blect_4 28 144 IPR001480 -
Rops1g02010 801 ProSiteProfiles Bulb-type lectin domain profile. 22 142 IPR001480 -
Rops1g02010 801 FunFam S-receptor-like serine/threonine-protein kinase 483 589 - -
Rops1g02010 801 Gene3D - 19 143 IPR036426 -
Rops1g02010 801 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 18 142 - -
Rops1g02010 801 CDD STKc_IRAK 517 785 - -
Rops1g02010 801 SUPERFAMILY Protein kinase-like (PK-like) 494 786 IPR011009 -
Rops1g02010 801 SMART serkin_6 511 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02010 801 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 24 794 - -
Rops1g02010 801 ProSiteProfiles Protein kinase domain profile. 511 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02010 801 PIRSF SRK 1 801 IPR024171 GO:0004674
Rops1g02010 801 ProSitePatterns Protein kinases ATP-binding region signature. 517 542 IPR017441 GO:0005524
Rops1g02010 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Rops1g02010 801 Gene3D - 144 270 IPR036426 -
Rops1g02010 801 Gene3D Transferase(Phosphotransferase) domain 1 590 793 - -
Rops1g02010 801 Pfam D-mannose binding lectin 70 159 IPR001480 -
Rops1g02010 801 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 184 IPR036426 -
Rops1g02010 801 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 590 791 - -
Rops1g02010 801 Gene3D Phosphorylase Kinase; domain 1 481 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02010 Rops-Chr1 40450821 40451459 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02010 446 796 Receptor kinase-like Gene Family AT1G56120 40.056 2.58e-67 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Rops1g02010 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02010 - - gmx:100775269 1103.97