Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02007 ATGGCAAGGCCTAGACGGGGTAGGAGGAGAAACCCCTCTAAGACAACGACAGAGGGAGGACAAAACAAGGAAACTAGTGGAGTTGGACAAGGTTCAAGCATGGAAAGAAGTTCACTTTTACCGGAAGGCCCAAGTCCAAGCATGGAGAATATTTTACCTTTACCTAAAGGACAAGGTTCAAGCATGAAAAAAGTTTCATCTTTACCAGAAGGAACAAGTTCAAGGAAAAAAACCATCTTATCATGGTTAATAGATTGCGAGTTTATCGAGGAAGATGAACAAGTATTCTATCAGGATGACACAACGAAAAGTATACCAATGACAGGAAGAATAACCAGGGATGGAATTCTGTGCAGCTGCCAGAAGGAAATATCTGTATGGACATTTGAGAAACATGCTGATAGTGATCTCAAACAACCCTATGAACATATTTACTTCCCCAAAAGAGAATCATATCTCCAGGTGTACCTGATTGTTGCTTGGCTTAAGGCTACTGAAGGAAAAAGCCGCGAAGTATTTTCCTTTATTCCGAAAGAAACTTCCACAAACCAAAAGGACGATGTTTGTTCAATATGTGGAAATGGGGGAGACTTGTTAAGCTGTGATAAGTGTCCCTCCACATTCCATGCATACTGTATGAATATGGAGAGAGCTCCCTGTCGTGATTGGTTATGTCCCTACTGCGTTTGTAAACACTCTGAGCTTGATGGTGAACATAACCAGTTCATCACATGCCCCCAGTGTGACAAAAATTATGTATGA 762 0.4134 MARPRRGRRRNPSKTTTEGGQNKETSGVGQGSSMERSSLLPEGPSPSMENILPLPKGQGSSMKKVSSLPEGTSSRKKTILSWLIDCEFIEEDEQVFYQDDTTKSIPMTGRITRDGILCSCQKEISVWTFEKHADSDLKQPYEHIYFPKRESYLQVYLIVAWLKATEGKSREVFSFIPKETSTNQKDDVCSICGNGGDLLSCDKCPSTFHAYCMNMERAPCRDWLCPYCVCKHSELDGEHNQFITCPQCDKNYV* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02007 253 ProSitePatterns Zinc finger PHD-type signature. 189 248 IPR019786 -
Rops1g02007 253 MobiDBLite consensus disorder prediction 1 70 - -
Rops1g02007 253 Pfam PHD-finger 188 231 IPR019787 -
Rops1g02007 253 SMART PHD_3 188 229 IPR001965 -
Rops1g02007 253 SUPERFAMILY FYVE/PHD zinc finger 178 231 IPR011011 -
Rops1g02007 253 MobiDBLite consensus disorder prediction 14 44 - -
Rops1g02007 253 Pfam Tify domain binding domain 109 155 IPR032308 -
Rops1g02007 253 PANTHER PHD FINGER PROTEIN 12 30 252 IPR042163 GO:0003714|GO:0045892
Rops1g02007 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 253 IPR013083 -
Rops1g02007 253 ProSiteProfiles Zinc finger PHD-type profile. 186 231 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02007 Rops-Chr1 40417918 40434447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02007 73 252 PHD Transcription Factor Family AT4G14920 40.541 2.34e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops1g02007 TDBD 9.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02007 - - aprc:113870228 252.292