Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01993 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTGTGGCGCAATGGACCGCCAGAGAAGCCAGTACTATGCAATGCTTGTGGCTCTCGATGGAGGACAAAGGGAACACTCGCAAATTATACCCCTTTACATGCTCGGGCAGAAACTGATGATTATGAGGATCAAAAGGTTTCCAGGATAAAGAGCATATCGTTAAATAAGAACAAAGAAGTGAAATCGCTCAAGCGAAAGCTGAACCATGATAATGTAGTATCTGGAGGGCTTGCTTCTGATTACAACCAGGGATTCCAAAAGTCTGTAGATGAAGATACAAGCAACCGATCAAGTTCAGGATCAGCTATCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGCACAGATGCTAGTGATCTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCTAAAAAGAGGACATGTGTGGGTCGTCCAAAGCCTTCTTCTGTGGAGAAGCTCACAAAAGATTTATGCACTATTCTTCATGAACAGCAGTCTTATTTTTCTGCATCTTCTGAAGAAGATCTTCTTTTTGAAAGTGAAACACCAATGGTTTCTGTTGAGATAGGACATGGAAGCGTTCTCATTAGGCATCCTAGCTGTATAGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCCAATGAGTGAGGCATATACATATTCTGGTCTCATTCTTATGCATGATGATTCCAGTCGCACAAACTTCTCATCTCAGGGAGTTGAAAAGGTCAGGAATTCTGCTAGCCAAGGAATGCAGCAGGAGCTACTTAAAAGTGGCAAGACTCAGCTTGAAAGAGTACAAATCCTTGGAAATCATGATTCACCACTGTGCTTAATAGATTTAAATGATGTAGTAAACTATGAAGAGTTTTTGAGAATCTTGACAAATGAAGAACGGACGCAATTACTGCAGTTTCTTCCTGTGGTTGATACAGCTAAACTTCCTGATAGCCTTAAAGTCATGTTCGATAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCGGAGGGTGTCTTTGATATCTCTTTGTCAGGGGCAAACCCTGAAGACTGTAAGACTTTGAAAAGACTTGCATTATCCAATATGTCAAAGTCGAAATGGGTAGAACACTATTGTTTTCTTAAGAGATGTAAAAATAAAGCTGGAAAATCTGGTACTCTAGGATCTACTGGTATGACATCAACTAATGTTGCAAACATCAAGAGAATGCGGGATGGCCAAAATCAAAACTTTGCAGAGCCAAAAACAACAATGAGGAGCCCCAAAAGAGTGATCACAAAGGCTAGCTATGAGGGCAAAGAAGAAGTAGAAGATGGTTCTTGCTATAGTCCCAAAAACCTATTTCCTTTGCCTCTTGATGCTAGCTCCCACTTGCTTGATCCTTTAAACTTTGTTGAGGAGAATACTGATCAGGATCTGCTGCTAGAGGTTCCATCTAACAGTTCATTTCCACAGGCAGAGCTCCTGTACCCAACTTTGAGCTTTGGTGTTCAAGCCAGTACTGGTAGCTCAGTATACTCACATCTTGTCCACCATTAA 1620 0.421 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDYEDQKVSRIKSISLNKNKEVKSLKRKLNHDNVVSGGLASDYNQGFQKSVDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCVGRPKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSCIAREEESEASSLSVDNKQCPMSEAYTYSGLILMHDDSSRTNFSSQGVEKVRNSASQGMQQELLKSGKTQLERVQILGNHDSPLCLIDLNDVVNYEEFLRILTNEERTQLLQFLPVVDTAKLPDSLKVMFDSSQFKENLTYFQQLLAEGVFDISLSGANPEDCKTLKRLALSNMSKSKWVEHYCFLKRCKNKAGKSGTLGSTGMTSTNVANIKRMRDGQNQNFAEPKTTMRSPKRVITKASYEGKEEVEDGSCYSPKNLFPLPLDASSHLLDPLNFVEENTDQDLLLEVPSNSSFPQAELLYPTLSFGVQASTGSSVYSHLVHH* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01993 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Rops1g01993 539 MobiDBLite consensus disorder prediction 99 124 - -
Rops1g01993 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Rops1g01993 539 FunFam GATA transcription factor 27 3 85 - -
Rops1g01993 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 519 IPR044589 -
Rops1g01993 539 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
Rops1g01993 539 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Rops1g01993 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Rops1g01993 539 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Rops1g01993 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Rops1g01993 539 Gene3D - 293 389 IPR038108 -
Rops1g01993 539 Pfam Asx homology domain 287 367 IPR028020 -
Rops1g01993 539 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01993 Rops-Chr1 40221163 40227153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01993 1 517 C2C2-Gata Transcription Factor Family AT4G17570 53.383 2.30e-161 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops1g01993 ASXH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01993 - - gmx:100798504 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01993 1 40221163 40227153 Rops2g04316 2 78724061 78730421 PCT