Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01992 ATGAATTCAGTGTCATCAAGAGGAATGACAACATCAGTCAATAACAGTCATTCTGAAGAAGGATTTAGTAAACCATTGATGGAAAATGGGGACTGCACTTCCCTTGCTCGGCCTATGTATAAACGACGTAAAGTTTCTGCCGTTCGTGATTTCCCTGCAGGTTGTGGACCATTTGCTTCAAGGGTTGATCCGGTGTTAAAGGTAGATATTACTGATTTTGGTTCTGCTAATGGTACAATTGTTGAGGATAAAAATGGTGAACATTTAGGGGGTGATACACTGACAATTTCCAAGTGCGAAGATGATCCTCAAAATTCTGAGTTTAAAAAAGATTTGTCTCTTGGCCAAACAATTGACTGTAGTTTGACGAAGGAAAATTCTGAAGTGAATGGACCTACTATGGCAAATGATGAACCTGCAAAAGTGCCATTGGTGGGTATGGAAACTTTGGATACAGAGTTTGCAACAGAAGACTCTGTAAAACATGACTCCTCTTATATAGCTGGTTCCAGTGCTTGGATAGAGGAGACTGTAACTAGAAGGTATCTTCCTCGAAGAAAAGTTTCAGCTGTCAGAGACTTTCCTCGTTCATGTGGACGTGACGCTCCACGTCTCAGCAAGGATGACTGTCCTGTGGGGATCTCTTCTTTGAATAACAAGAGAGTGGGTCAACAGAACTTGGCTGTAGATGACATTCCATTGAAAAAAGTAGCAGCCACTGATGTAAAAGAAATGGAAAAGAACCTTCAAAATGAATATGGTTGCAAGAGAAAGCTTGTGGATATTATTCAAGCTGATTCTGAAGGGAATGCTAGAGAGAGAGTCAAGAAGGTGAATGTATTTAAAACATCTTCTGAGATGAAATTGCCACTGGAAAACAAAAGAGAAAAGTATATTACACTTCCTGAAAAAAGTAAACATCATCAGGTTGCAATTAATTCCAAGGAAGTGGTTAAAGAGGAAAATAGGGATGCTGTTCAGGTTGAGGGAACATCAGGGCTAGAGATTATAGTTTTCCCAAGAGTCCAAAATCTTGAGAAAAAGCATAGGGATATATCTAGTCAGCGTGAGTTGAAAGGAGATTTTAATAGATTGGAGGTCTCGTCAGACAGGAAAGTAGTGTTAGGTCTGATGGCTAAATCAGAATGTCCTTGGAGGTCTGATAAAGGTTCCTCCAAATTTAAATTGATTGGTGGTACAAATGAAAGCAAGGGAAAGAAAATTGATTCTTTTGCACGGCCAGACAAGTCTAAAACCGCTATCAAGACTAAAGATGCATTGAATCTTTCCGGGAAGAAGCCATTGAAAAAGAAAAAAGTAAATGCTGCTTCTGATGATATGGGTCAATTAGTAATTTGGGAAAAGAAGGATTCTCTTGACCCTAATGAAAATAACAAAGACTTTCAAATTGTCCCAAAACCACTTGGTTTGAGTGTAAATGTTCCTCCTTTGGGTCATCGTAATTTCAATGGCCATGAGAATGACTTGAATGTGACCCGGAATAAAGTGAGGGAAACATTACGCCTGTTTCAAGTTGTTTCTAGAAAGCTTTTGCAGGAAGTAGAATCAAAGCCACATGAGCGAGCAAGTAATTACAAGAGGATTGATTTACAAGCTGCGAAGATCCTTAAGGATAAAGGGAAATATGTCAACACAGGCAAGCAGATCTTGGGATCTGTCCCTGGGGTTGAAGTAGGCGATGAATTTCAATACAGGGTGGAGCTTAATATAATTGGCCTTCACCGCCCGATTCAGGGTGGTATAGATTATGTGAAGCACAATGGCAAGATCCTTGCAACTAGTATTGTTGCATCTGGGGGCTATGCTGATGAATTGGATAATTCGGATGTCTTGATATATTCAGGGCAGGGTGGAAATGTGATGAGCACTGATAAAGAACCTGAAGATCAGAAGCTTGAGCGGGGCAATCTTGCTCTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATACGTGGTTCTGAATCAATGGATGGAAAATTTAAGACATATGTTTATGATGGATTCTATCTAGTTGAGTCATGCTGGCAGGATATGGGGCCACATGGGAAGCTGGTTTATAGGTTTCGCCTGCGAAGAATCCCTGGTCAACCAGAGCTTGCTTTGAAGGAAGTGAAGAAATCTAAAAAGTTCAAAACAAGAGAAGGTCTGATTGTTGATGATATTTCTTATGGGAAAGAGCGTATTCCCATATGTGCTGTGAACACCATAGATGATGAAAAACCCCCGCCATTTACATACATAACCAACATGATATATCCTGATTGTTGCAATCTCGATCCTCCAGAAGGATGTGATTGTACTAATGGATGCTCTGACTTGGAAAAATGTTCTTGTGTAGTAAAAAATGGGGGAGAGATCCCATTCAATCACAATGGGGCTATTGTAGAAGCAAAGCTTCTAGTGTATGAGTGTGGACCTTATTGCAAGTGCCCTTCAACCTGTCATAACAGAGTCAGCCAACTTGGCATAAAGTTTCAACTTGAAATTTTTAAAACCAGTACAAGAGGATGGGGTGTAAGATCCCTAAATTCCATCCCTTCAGGAAGTTTTATCTGTGAATATATAGGAGAGGTTCTTGAAGAAAAGGAAGCTGAACAAAGAACTGGTAATGACGAGTATCTTTTTGATATTGGAAATAACTACAGCAACAATGCTCTTTGGGATGGACTTTTGACCCTTATGCCAGATGCACAGTCAAGTTCTTGTGAAGTTATGAAGGATGGTGGCTTCACCATTGACGCCGCACAGTTTGGTAATGTGGGAAGATTCATCAACCATAGTTGCTCCCCAAATCTTTATGCTCAGAATGTCCTTTATGATCATCATGACAAAAGGATTCCTCACATAATGTTCTTTGCTGCTGAAAACATTCCTCCCTTGCAAGAGCTGAGTTACGATTACAATTATATGATAGATCAAGTTCATGATTCTGATGGCAATATAAAAAAGAAGGATTGCTATTGTGGTTCTGTGGAATGTACCGGTAGGATGTATTGA 3024 0.3995 MNSVSSRGMTTSVNNSHSEEGFSKPLMENGDCTSLARPMYKRRKVSAVRDFPAGCGPFASRVDPVLKVDITDFGSANGTIVEDKNGEHLGGDTLTISKCEDDPQNSEFKKDLSLGQTIDCSLTKENSEVNGPTMANDEPAKVPLVGMETLDTEFATEDSVKHDSSYIAGSSAWIEETVTRRYLPRRKVSAVRDFPRSCGRDAPRLSKDDCPVGISSLNNKRVGQQNLAVDDIPLKKVAATDVKEMEKNLQNEYGCKRKLVDIIQADSEGNARERVKKVNVFKTSSEMKLPLENKREKYITLPEKSKHHQVAINSKEVVKEENRDAVQVEGTSGLEIIVFPRVQNLEKKHRDISSQRELKGDFNRLEVSSDRKVVLGLMAKSECPWRSDKGSSKFKLIGGTNESKGKKIDSFARPDKSKTAIKTKDALNLSGKKPLKKKKVNAASDDMGQLVIWEKKDSLDPNENNKDFQIVPKPLGLSVNVPPLGHRNFNGHENDLNVTRNKVRETLRLFQVVSRKLLQEVESKPHERASNYKRIDLQAAKILKDKGKYVNTGKQILGSVPGVEVGDEFQYRVELNIIGLHRPIQGGIDYVKHNGKILATSIVASGGYADELDNSDVLIYSGQGGNVMSTDKEPEDQKLERGNLALKNSSEEKNPVRVIRGSESMDGKFKTYVYDGFYLVESCWQDMGPHGKLVYRFRLRRIPGQPELALKEVKKSKKFKTREGLIVDDISYGKERIPICAVNTIDDEKPPPFTYITNMIYPDCCNLDPPEGCDCTNGCSDLEKCSCVVKNGGEIPFNHNGAIVEAKLLVYECGPYCKCPSTCHNRVSQLGIKFQLEIFKTSTRGWGVRSLNSIPSGSFICEYIGEVLEEKEAEQRTGNDEYLFDIGNNYSNNALWDGLLTLMPDAQSSSCEVMKDGGFTIDAAQFGNVGRFINHSCSPNLYAQNVLYDHHDKRIPHIMFFAAENIPPLQELSYDYNYMIDQVHDSDGNIKKKDCYCGSVECTGRMY* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01992 1007 CDD SET_AtSUVH-like 751 978 - -
Rops1g01992 1007 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 390 1000 - -
Rops1g01992 1007 SMART set_7 834 983 IPR001214 GO:0005515
Rops1g01992 1007 SMART G9a_1 553 705 IPR003105 -
Rops1g01992 1007 MobiDBLite consensus disorder prediction 1 22 - -
Rops1g01992 1007 ProSiteProfiles Post-SET domain profile. 991 1007 IPR003616 -
Rops1g01992 1007 MobiDBLite consensus disorder prediction 1 29 - -
Rops1g01992 1007 Gene3D - 540 721 IPR036987 -
Rops1g01992 1007 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 369 1007 IPR025794 GO:0016571
Rops1g01992 1007 Pfam SET domain 845 977 IPR001214 GO:0005515
Rops1g01992 1007 ProSiteProfiles Pre-SET domain profile. 771 831 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops1g01992 1007 ProSiteProfiles SET domain profile. 834 977 IPR001214 GO:0005515
Rops1g01992 1007 SMART preset_2 727 818 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops1g01992 1007 Pfam SAD/SRA domain 557 705 IPR003105 -
Rops1g01992 1007 ProSiteProfiles YDG domain profile. 558 701 IPR003105 -
Rops1g01992 1007 Pfam Pre-SET motif 730 826 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops1g01992 1007 SMART PostSET_3 991 1007 IPR003616 -
Rops1g01992 1007 Gene3D SET domain 722 1007 IPR046341 -
Rops1g01992 1007 SUPERFAMILY SET domain 717 978 IPR046341 -
Rops1g01992 1007 SUPERFAMILY PUA domain-like 539 714 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01992 Rops-Chr1 40207244 40212212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01992 497 1004 Su(var)3-9 homologs AT5G04940 41.746 5.05e-121 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops1g01992 SAD_SRA 4e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01992 K11420 - gmx:100803378 1289.25