Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01991 ATGGAACTTAATTTTAAGCACCAACTTTGCCTTGTTTGTATCATACTGCTCTTACCTATCCTGCGTACCTCTCAGGACTCTTTTACATGCTCCAGGGCAACCTATTACGGTAGCCCAGATTGCTATGGAAATCCAAGGGGAGCTTGTGGCTATGGCGATTACGGAAAGACAGTAAACGATGGCAATGTCGCAGGCGTGTCTTGGCTATGGAAGAATGGATCTGGCTGTGGTGCATGTTATCAAGTTAAGTGCAAAATACCACAATTCTGCAGTGATGATGGAACATACGTGGTGGTGACAGATTATGGTGAGGGAGACAGAACAGACTTCATAATGAGTCCACGTGCCTATTCAAGATTGGGGAGAAATGCAGATGCATCTGCAGAGCTTTTCAAATATGGTGTAGTGGATGTAGACTACAGAAGGGTACCCTGTAGATACAGTGGCTACAACGTCTTGCTTAAGGTCCATGAGCATAGCCGAAACCCTCACTACTTAGCCATTCTCATTCTCTATGTTGGTGGAACATCCGACATAACTGCTGTTCAATTGTGGCAGGAAGATTGCCACGAGTGGAGGTCAATGCGCAGGGTCTTTGGTGTGGTGTTTGATGCTGAAAACCCACCTAGAGGTGACATCAAGTTGAGGTTCCAATTGAGTGGTAGTGCAGGGCTGTATTGGGTGGAGTCCAAGAATGTCATCTCTAGTGATTGGGAGGCCGGGGCTGTTTATGACTCAGAAATTCAGCTTGGTTAA 756 0.4616 MELNFKHQLCLVCIILLLPILRTSQDSFTCSRATYYGSPDCYGNPRGACGYGDYGKTVNDGNVAGVSWLWKNGSGCGACYQVKCKIPQFCSDDGTYVVVTDYGEGDRTDFIMSPRAYSRLGRNADASAELFKYGVVDVDYRRVPCRYSGYNVLLKVHEHSRNPHYLAILILYVGGTSDITAVQLWQEDCHEWRSMRRVFGVVFDAENPPRGDIKLRFQLSGSAGLYWVESKNVISSDWEAGAVYDSEIQLG* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01991 251 Gene3D - 146 247 IPR036749 -
Rops1g01991 251 PRINTS Major pollen allergen Lol pI signature 222 239 IPR005795 GO:0005576|GO:0019953
Rops1g01991 251 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Rops1g01991 251 PRINTS Major pollen allergen Lol pI signature 64 75 IPR005795 GO:0005576|GO:0019953
Rops1g01991 251 PRINTS Major pollen allergen Lol pI signature 84 94 IPR005795 GO:0005576|GO:0019953
Rops1g01991 251 PRINTS Major pollen allergen Lol pI signature 155 170 IPR005795 GO:0005576|GO:0019953
Rops1g01991 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Rops1g01991 251 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
Rops1g01991 251 PANTHER EXPANSIN-B3 14 249 - -
Rops1g01991 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Rops1g01991 251 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
Rops1g01991 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Rops1g01991 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Rops1g01991 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Rops1g01991 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Rops1g01991 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Rops1g01991 251 CDD DPBB_EXLB_N 31 145 - -
Rops1g01991 251 SMART dpbb_1 62 140 IPR007112 -
Rops1g01991 251 Gene3D - 20 145 IPR036908 -
Rops1g01991 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Rops1g01991 251 Pfam Expansin C-terminal domain 154 234 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01991 Rops-Chr1 40203645 40205407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01991 9 250 Expansin Gene Family AT4G17030 62.551 7.11e-115 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01991 - - ccaj:109800044 477.633