Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01988 ATGGAGTTACTCCCTCAGCAAGTTGCTTATTATGATCCTCGTCTCTTTGTAGAACAGTTTCCAAACATGGGAAATTCCAGTGTAATCAAGCCTGTGACCAAGGAACCTAGAGGTTCACAGATGACAGTCTTTTATGCTGGGCAAGTTGTGGTGTTTGATGATTTTCCAGCTGACAAAGCCAAAGAGATCATGTCCTATGCCAGCAAGGGAATCTCCCAAAACCAGAACAACTATGGTTACATATTTGCTCATGGCCACCCCGTATTCCCTGCTAGTTCCAGTAGGCAATTTCCTTTTCATGTGAATATCATCCCTAGCACTGCCAACAATTCGGTTCAAGAGCACCCTCAAGCACAATCCACACCTGTTGTTTGTGATCTACCAATGACTAGGAAGGCTTCACTTTATCGGTTCTTAGAGAAAAGGAAGGATAGAATTGCTGCCAAAGCACCATATCAGACAAGCAATCCCATGGCAACCCTTAATAAGGCAGCTGATGGATCAATGTCATGGTTCACCTTGGCACCTAAATTACCACAAGACAAATCTGAGAGTAGCTCCAGTTCTGTGTTATTTTAA 579 0.4335 MELLPQQVAYYDPRLFVEQFPNMGNSSVIKPVTKEPRGSQMTVFYAGQVVVFDDFPADKAKEIMSYASKGISQNQNNYGYIFAHGHPVFPASSSRQFPFHVNIIPSTANNSVQEHPQAQSTPVVCDLPMTRKASLYRFLEKRKDRIAAKAPYQTSNPMATLNKAADGSMSWFTLAPKLPQDKSESSSSSVLF* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01988 192 SMART tify_2 34 69 IPR010399 -
Rops1g01988 192 Pfam Jas motif 128 153 IPR018467 -
Rops1g01988 192 Pfam tify domain 36 68 IPR010399 -
Rops1g01988 192 ProSiteProfiles Tify domain profile. 34 69 IPR010399 -
Rops1g01988 192 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 27 159 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01988 Rops-Chr1 40163652 40166003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01988 26 178 Tify Gene Family AT1G19180 38.608 4.76e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Rops1g01988 tify 4.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01988 K13464 - gmx:100306332 225.328